Os05g0380400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os05g0380400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.06 | 0.634 | 5.38 | 0.802 | 1.29 | -2.88 | 0.31 | -1.71 | 0.728 | 1.03 | 8.091 | 55 | -- | -- |
| 183.78 | 0.631 | 5.35 | 1.05 | 1.3 | -2.89 | 0.698 | -- | 0.791 | 1.06 | 5.196 | 56 | -- | -- |
| 182.35 | 0.629 | 5.39 | 0.743 | 1.28 | -2.89 | -- | -2.07 | 0.714 | 1.04 | 6.709 | 55 | -- | -- |
| 185.82 | 0.635 | 5.35 | 1.03 | 1.29 | -2.92 | -- | -- | 0.793 | 1.06 | 7.561 | 56 | -- | -- |
| 247.48 | 0.737 | 5.32 | 1 | -- | -4.36 | -- | -2.28 | 0.926 | -- | 14.12 | 10 | -- | -- |
| 264.05 | 0.762 | 5.44 | 0.477 | 2.06 | -- | 1.08 | -- | 0.39 | 1.74 | -- | -- | -- | -- |
| 268.65 | 0.768 | 5.44 | 0.442 | 2.06 | -- | -- | -- | 0.384 | 1.74 | -- | -- | -- | -- |
| 244.66 | 0.732 | 5.29 | 1.18 | -- | -3.45 | -- | -- | 0.98 | -- | 20.8 | 37 | -- | -- |
| 211.02 | 0.677 | 5.39 | -- | 1.43 | -2.42 | -- | -- | 0.619 | 1.28 | 5.308 | 51 | -- | -- |
| 527.5 | 1.07 | 5.42 | 0.526 | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
| 273.8 | 0.774 | 5.45 | -- | 2.07 | -- | -- | -- | 0.335 | 1.75 | -- | -- | -- | -- |
| 279.62 | 0.781 | 5.33 | -- | -- | -3.24 | -- | -- | 0.812 | -- | 21.03 | 6 | -- | -- |
| 534.81 | 1.08 | 5.43 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.52 | temperature | 10.0 | 30 | > th | dose dependent | no | NA | NA |
| 10 | 183.56 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 11 | 183.66 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 15 | 184.99 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 17 | 185.47 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 19 | 185.74 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 21 | 185.82 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 25 | 186.11 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 28 | 186.53 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 46 | 187.66 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 47 | 187.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 48 | 187.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 50 | 187.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 53 | 188.10 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 55 | 188.16 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 56 | 188.21 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 60 | 188.36 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 63 | 188.41 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 77 | 188.81 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 82 | 188.89 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 110 | 189.17 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 128 | 189.34 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 137 | 189.37 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 183 | 189.82 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 190 | 189.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 196 | 189.94 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 197 | 189.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 264 | 190.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 270 | 190.63 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 292 | 190.78 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 308 | 190.96 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 314 | 191.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 349 | 191.20 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 351 | 191.20 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 365 | 191.26 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 19 |
| 367 | 191.27 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 413 | 191.38 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 414 | 191.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 432 | 191.47 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 450 | 191.53 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 463 | 191.58 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 502 | 191.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 505 | 191.80 | temperature | 30.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 512 | 191.85 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 514 | 191.86 | temperature | 25.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 535 | 191.89 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 536 | 191.91 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 541 | 191.95 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 599 | 192.26 | temperature | 30.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 628 | 192.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 651 | 192.45 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 654 | 192.46 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 707 | 192.68 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 709 | 192.69 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 710 | 192.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 739 | 192.85 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 767 | 193.01 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 779 | 193.08 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 798 | 193.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 802 | 193.21 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 893 | 193.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 930 | 193.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 954 | 193.58 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 963 | 193.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 964 | 193.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 23 |