Os05g0380300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR protein (Fragment).
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Os05g0380300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.44 | 0.727 | 8.98 | -1.29 | 0.936 | 2.09 | -1.38 | 2.08 | 0.424 | 1.61 | 72 | 1314 | -- | -- |
| 244.73 | 0.729 | 8.95 | -0.921 | 1.09 | 2.23 | -1.61 | -- | 0.5 | 1.41 | 70.99 | 1249 | -- | -- |
| 243.3 | 0.726 | 8.99 | -1.21 | 1.12 | 2.14 | -- | 2.31 | 0.415 | 1.07 | 70 | 1242 | -- | -- |
| 254.4 | 0.743 | 8.94 | -0.845 | 1.09 | 2.28 | -- | -- | 0.512 | 1.14 | 70.98 | 1249 | -- | -- |
| 273.17 | 0.77 | 8.97 | -1.35 | -- | 2.27 | -- | 2.17 | 0.398 | -- | 75 | 1563 | -- | -- |
| 426.43 | 0.968 | 9.01 | -1.42 | 0.596 | -- | -2.1 | -- | 0.184 | 1.74 | -- | -- | -- | -- |
| 443.33 | 0.986 | 9.01 | -1.35 | 0.595 | -- | -- | -- | 0.197 | 1.15 | -- | -- | -- | -- |
| 276.03 | 0.774 | 8.91 | -0.982 | -- | 2.38 | -- | -- | 0.545 | -- | 71.01 | 1560 | -- | -- |
| 272.55 | 0.769 | 8.92 | -- | 1.12 | 2.41 | -- | -- | 0.619 | 1.1 | 70.78 | 1245 | -- | -- |
| 465.3 | 1.01 | 9 | -1.33 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 491.67 | 1.04 | 8.98 | -- | 0.573 | -- | -- | -- | 0.348 | 1.05 | -- | -- | -- | -- |
| 297.35 | 0.803 | 8.91 | -- | -- | 2.55 | -- | -- | 0.625 | -- | 70.78 | 1564 | -- | -- |
| 512.07 | 1.06 | 8.97 | -- | -- | -- | -- | -- | 0.357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.05 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 19 |
| 44 | 221.90 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 63 | 222.10 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 78 | 222.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 90 | 222.32 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 92 | 222.32 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 96 | 222.34 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 222 | 222.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 250 | 223.07 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 253 | 223.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 368 | 224.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 371 | 224.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 373 | 224.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 384 | 224.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 499 | 225.21 | temperature | 30 | 14400 | < th | dose independent | sin | 17 | NA |
| 526 | 225.41 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 548 | 225.51 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 559 | 225.74 | temperature | 25 | 14400 | > th | dose independent | sin | 7 | NA |
| 561 | 225.76 | temperature | 30 | 14400 | > th | dose independent | sin | 17 | NA |
| 624 | 226.21 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 10 |
| 639 | 226.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 684 | 226.83 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 693 | 226.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 698 | 226.94 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 700 | 226.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 701 | 226.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 711 | 227.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 723 | 227.08 | temperature | 25 | 14400 | < th | dose independent | sin | 7 | NA |
| 794 | 227.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 799 | 227.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 801 | 227.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 825 | 227.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 833 | 227.54 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 843 | 227.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 18 |
| 856 | 227.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 22 |
| 927 | 227.62 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 965 | 227.90 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 5 |