Os05g0380200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os05g0380200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.6 | 0.837 | 8.18 | -2.12 | 1.47 | 2.63 | -0.503 | 3.12 | 0.271 | 23.4 | 58.64 | 1284 | -- | -- |
| 330.45 | 0.847 | 8.17 | -1.74 | 1.4 | 2.74 | -0.871 | -- | 0.295 | 23.5 | 54.4 | 1310 | -- | -- |
| 318.21 | 0.831 | 8.18 | -2.12 | 1.55 | 2.67 | -- | 3.39 | 0.274 | 23.3 | 59 | 1254 | -- | -- |
| 333.37 | 0.85 | 8.17 | -1.71 | 1.4 | 2.75 | -- | -- | 0.295 | 23.3 | 54.45 | 1314 | -- | -- |
| 409.51 | 0.943 | 8.11 | -2.04 | -- | 2.71 | -- | 3.04 | 0.343 | -- | 61 | 1497 | -- | -- |
| 501.68 | 1.05 | 8.2 | -1.88 | 1.12 | -- | -1.01 | -- | 0.159 | 22.8 | -- | -- | -- | -- |
| 505.42 | 1.05 | 8.2 | -1.84 | 1.14 | -- | -- | -- | 0.165 | 22.4 | -- | -- | -- | -- |
| 410.66 | 0.944 | 8.14 | -1.74 | -- | 2.61 | -- | -- | 0.3 | -- | 54.29 | 1525 | -- | -- |
| 408.52 | 0.941 | 8.12 | -- | 1.43 | 2.84 | -- | -- | 0.49 | 23.2 | 49.6 | 1307 | -- | -- |
| 584.81 | 1.13 | 8.17 | -1.82 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 594.63 | 1.14 | 8.15 | -- | 1.13 | -- | -- | -- | 0.369 | 22.3 | -- | -- | -- | -- |
| 488.38 | 1.03 | 8.1 | -- | -- | 2.62 | -- | -- | 0.466 | -- | 48.45 | 1516 | -- | -- |
| 672.26 | 1.21 | 8.13 | -- | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 304.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 4 | 311.29 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 23 | 318.88 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 26 | 319.74 | humidity | 60 | 1440 | > th | dose dependent | sin | 3 | NA |
| 30 | 320.54 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 37 | 321.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 47 | 321.74 | humidity | 70 | 1440 | > th | dose independent | sin | 9 | NA |
| 52 | 322.10 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 56 | 322.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 58 | 322.36 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 60 | 322.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 62 | 322.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 63 | 322.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 66 | 322.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 67 | 322.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 69 | 322.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 75 | 322.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 76 | 322.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 96 | 322.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 97 | 322.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 109 | 322.43 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 136 | 322.52 | humidity | 70 | 1440 | > th | dose independent | sin | 2 | NA |
| 164 | 323.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 170 | 323.07 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 19 |
| 178 | 323.17 | humidity | 60 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 181 | 323.21 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 200 | 323.38 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 214 | 323.60 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 219 | 323.69 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 229 | 323.87 | humidity | 90 | 1440 | < th | dose dependent | sin | 5 | NA |
| 231 | 323.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 232 | 323.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 236 | 323.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 251 | 323.99 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 254 | 323.99 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 316 | 324.10 | humidity | 80 | 1440 | < th | dose dependent | sin | 8 | NA |
| 349 | 324.57 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 395 | 325.47 | humidity | 70 | 1440 | < th | dose independent | sin | 1 | NA |
| 408 | 325.62 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 416 | 325.70 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 435 | 326.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 451 | 326.30 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 535 | 327.25 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 561 | 327.38 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 565 | 327.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 711 | 329.39 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 714 | 329.44 | humidity | 70 | 1440 | < th | dose independent | sin | 9 | NA |
| 737 | 329.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 775 | 330.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 801 | 330.71 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 807 | 330.79 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 839 | 331.25 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 862 | 331.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |