Os05g0379500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR protein (Fragment).
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Os05g0379500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.78 | 0.573 | 6.49 | 1.17 | 1.04 | -1.56 | -0.775 | -1.42 | 0.598 | 17.4 | 28.76 | 114 | -- | -- |
| 152.07 | 0.579 | 6.52 | 0.954 | 1.13 | -1.5 | -0.374 | -- | 0.551 | 17.8 | 29.21 | 113 | -- | -- |
| 149.62 | 0.57 | 6.5 | 1.15 | 1.09 | -1.58 | -- | -1.31 | 0.569 | 17.3 | 26.83 | 140 | -- | -- |
| 151.44 | 0.573 | 6.52 | 0.929 | 1.06 | -1.53 | -- | -- | 0.535 | 17.6 | 28.98 | 97 | -- | -- |
| 193.78 | 0.648 | 6.5 | 1.05 | -- | -2.31 | -- | -1.69 | 0.448 | -- | 29.39 | 174 | -- | -- |
| 183.46 | 0.635 | 6.45 | 1.32 | 1.47 | -- | -0.314 | -- | 0.852 | 16.8 | -- | -- | -- | -- |
| 183.72 | 0.635 | 6.45 | 1.31 | 1.47 | -- | -- | -- | 0.85 | 16.8 | -- | -- | -- | -- |
| 196.01 | 0.652 | 6.53 | 0.735 | -- | -2.31 | -- | -- | 0.37 | -- | 29.7 | 150 | -- | -- |
| 171.61 | 0.61 | 6.56 | -- | 0.959 | -1.95 | -- | -- | 0.357 | 18 | 28.95 | 89 | -- | -- |
| 297.87 | 0.806 | 6.44 | 1.26 | -- | -- | -- | -- | 0.812 | -- | -- | -- | -- | -- |
| 229.25 | 0.708 | 6.48 | -- | 1.44 | -- | -- | -- | 0.704 | 16.8 | -- | -- | -- | -- |
| 208.53 | 0.673 | 6.56 | -- | -- | -2.51 | -- | -- | 0.262 | -- | 29.6 | 151 | -- | -- |
| 339.7 | 0.86 | 6.47 | -- | -- | -- | -- | -- | 0.673 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 6 | 135.81 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 16 |
| 8 | 136.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 19 | 138.13 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 21 | 138.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 22 | 138.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 30 | 138.68 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 48 | 140.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 55 | 140.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 60 | 140.67 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 80 | 141.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 120 | 142.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 211 | 143.66 | temperature | 25 | 10 | < th | dose dependent | sin | 0 | NA |
| 249 | 144.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 17 |
| 270 | 144.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 284 | 144.92 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 312 | 145.27 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 327 | 145.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 358 | 145.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 404 | 146.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 409 | 146.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 453 | 146.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 556 | 148.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 560 | 148.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 581 | 148.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 606 | 148.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 669 | 148.93 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 697 | 149.18 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 751 | 149.63 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 769 | 149.75 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 781 | 149.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 792 | 149.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 795 | 149.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 806 | 149.98 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 863 | 150.34 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 18 |
| 865 | 150.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 886 | 150.48 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 926 | 150.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 945 | 150.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 952 | 151.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 966 | 151.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 970 | 151.09 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 993 | 151.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |