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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0379400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0423) R2 : 0.326
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 12.5 (0.76) R2dE : 0.315 R2E : 0.316
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.215 (0.0891) R2dN8 : 0.0102 R2N8 : 0.0114
σ : 0.768
deviance : 270.45
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 2.002
memory length : 2
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 2.54

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.19 0.771 2.71 1.27 0.0889 -134 0.487 479 -0.212 7.56 1 2 17 1
269.28 0.77 3.08 0.0251 0.091 12.7 0.506 -- -0.211 7.5 1 2 17 1
1096.69 1.54 2.16 3.34 0.653 -161 -- 479 0.947 7.68 2.002 2 16 2.54
269.89 0.77 3.08 0.0402 0.0955 12.5 -- -- -0.211 9.06 2.002 2 16 2.54
357.21 0.88 2.75 1.79 -- -177 -- 480 -0.116 -- 1.179 5 18 3.38
424.57 0.966 3.09 0.225 0.0781 -- 0.508 -- -0.226 16.8 -- -- -- --
425.11 0.966 3.09 0.228 0.0905 -- -- -- -0.223 14.9 -- -- -- --
270.41 0.769 3.09 0.0405 -- 12.5 -- -- -0.211 -- 2.002 2 16 2.54
269.93 0.769 3.08 -- 0.0956 12.6 -- -- -0.216 9.02 1.489 2 17 2.73
425.59 0.964 3.09 0.224 -- -- -- -- -0.225 -- -- -- -- --
426.48 0.966 3.09 -- 0.086 -- -- -- -0.248 14.8 -- -- -- --
270.45 0.768 3.09 -- -- 12.5 -- -- -0.215 -- 2.002 2 16 2.54
426.91 0.964 3.1 -- -- -- -- -- -0.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.19 wind 1 30 < th dose independent rect. 17 1
12 269.19 wind 1 30 < th dose dependent rect. 17 1
41 285.41 humidity 70 90 < th dose independent rect. 17 1
43 288.13 humidity 70 90 < th dose dependent rect. 17 1
227 352.71 humidity 50 270 < th dose independent rect. 14 1
228 352.72 wind 1 10 < th dose independent rect. 14 4
232 352.78 humidity 50 270 < th dose dependent rect. 14 1
237 353.80 humidity 50 270 < th dose independent rect. 14 4
255 354.09 humidity 50 270 < th dose dependent rect. 14 4
300 358.02 humidity 50 270 < th dose dependent sin 12 NA
304 358.60 humidity 50 270 < th dose independent sin 12 NA
327 360.61 humidity 50 270 > th dose independent sin 12 NA
531 382.97 atmosphere 1005 270 < th dose independent rect. 14 3
534 383.35 atmosphere 1015 4320 > th dose dependent rect. 6 1
538 383.99 atmosphere 1015 4320 > th dose independent rect. 6 1
542 384.01 atmosphere 1015 4320 < th dose independent rect. 7 1
578 384.71 temperature 25 90 > th dose independent rect. 17 1
635 385.98 atmosphere 1015 4320 > th dose independent rect. 24 10
639 386.03 atmosphere 1015 4320 < th dose independent rect. 24 10
750 386.94 atmosphere 1015 4320 > th dose dependent sin 6 NA
751 386.95 atmosphere 1015 4320 > th dose independent sin 6 NA
753 386.96 temperature 25 10 < th dose independent rect. 18 1
757 386.97 atmosphere 1015 4320 < th dose independent sin 6 NA
916 387.55 radiation 1 10 < th dose dependent rect. 17 1