Os05g0379300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0379300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.42 | 0.71 | 4.07 | 1.74 | 1.03 | 1.93 | 1.37 | 3.4 | -0.339 | 13.6 | 1015 | 6112 | -- | -- |
| 242.92 | 0.726 | 3.97 | 2.1 | 1.02 | 1.14 | 1.28 | -- | -0.233 | 13.6 | 1013 | 6176 | -- | -- |
| 235.83 | 0.715 | 4.08 | 1.81 | 1.03 | 1.94 | -- | 3.47 | -0.339 | 13.6 | 1015 | 6329 | -- | -- |
| 249.97 | 0.736 | 3.97 | 2.17 | 1.03 | 1.12 | -- | -- | -0.222 | 13.6 | 1013 | 6239 | -- | -- |
| 298.38 | 0.805 | 4.1 | 1.77 | -- | 1.98 | -- | 3.71 | -0.34 | -- | 1015 | 9034 | -- | -- |
| 277.5 | 0.781 | 4.02 | 1.68 | 1.04 | -- | 1.32 | -- | -0.458 | 13.6 | -- | -- | -- | -- |
| 284.38 | 0.79 | 4.02 | 1.73 | 1.04 | -- | -- | -- | -0.45 | 13.6 | -- | -- | -- | -- |
| 311.71 | 0.822 | 3.97 | 2.2 | -- | 0.992 | -- | -- | -0.2 | -- | 1013 | 12540 | -- | -- |
| 346.86 | 0.867 | 4.04 | -- | 0.978 | 0.991 | -- | -- | -0.557 | 13.5 | 1013 | 3827 | -- | -- |
| 350.1 | 0.874 | 4.03 | 1.69 | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
| 363.06 | 0.891 | 4.06 | -- | 1.01 | -- | -- | -- | -0.643 | 13.6 | -- | -- | -- | -- |
| 405.39 | 0.938 | 4.05 | -- | -- | 1.09 | -- | -- | -0.565 | -- | 1013 | 3817 | -- | -- |
| 425.07 | 0.962 | 4.07 | -- | -- | -- | -- | -- | -0.66 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.00 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 222.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 222.19 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 4 | 222.28 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 5 | 222.29 | wind | 9 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 7 | 222.33 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 23 | 222.46 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 43 | 222.65 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 48 | 223.01 | humidity | 60 | 14400 | < th | dose dependent | sin | 6 | NA |
| 58 | 223.46 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 72 | 223.55 | humidity | 60 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 115 | 224.56 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 118 | 224.66 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 143 | 225.24 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 155 | 225.48 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 156 | 225.51 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 158 | 225.55 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 162 | 225.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 168 | 225.78 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 174 | 225.89 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 176 | 225.90 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 179 | 225.91 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 260 | 226.24 | humidity | 50 | 14400 | > th | dose independent | sin | 20 | NA |
| 275 | 226.43 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 276 | 226.44 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 17 |
| 284 | 226.45 | humidity | 50 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 312 | 226.47 | humidity | 50 | 14400 | > th | dose independent | no | NA | NA |
| 318 | 226.47 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 321 | 226.47 | humidity | 50 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 331 | 226.48 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 339 | 226.48 | humidity | 50 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 408 | 226.64 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 484 | 227.24 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 488 | 227.30 | humidity | 60 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 489 | 227.30 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 494 | 227.36 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 497 | 227.36 | humidity | 80 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 499 | 227.38 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 501 | 227.39 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 502 | 227.39 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 503 | 227.41 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 525 | 227.46 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 532 | 227.51 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 615 | 227.71 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 720 | 227.88 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 732 | 227.96 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 9 |
| 734 | 227.98 | humidity | 60 | 4320 | > th | dose independent | rect. | 4 | 8 |
| 745 | 228.01 | humidity | 60 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 757 | 228.05 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 764 | 228.07 | humidity | 60 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 784 | 228.14 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 829 | 228.31 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 866 | 228.47 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 905 | 228.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 922 | 228.66 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 929 | 228.72 | humidity | 50 | 14400 | < th | dose independent | rect. | 11 | 22 |
| 949 | 228.79 | humidity | 50 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 976 | 228.87 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 12 |