Os05g0378900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0378900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.81 | 0.285 | 9.69 | 1.5 | 0.452 | 0.604 | 0.164 | -1.44 | 0.441 | 19 | 90.64 | 267 | -- | -- |
| 39.46 | 0.293 | 9.67 | 1.46 | 0.463 | 0.593 | 0.628 | -- | 0.441 | 18.5 | 90.85 | 289 | -- | -- |
| 36.86 | 0.283 | 9.69 | 1.51 | 0.444 | 0.593 | -- | -1.54 | 0.439 | 19.1 | 90.67 | 266 | -- | -- |
| 40.76 | 0.297 | 9.68 | 1.46 | 0.456 | 0.54 | -- | -- | 0.425 | 19.1 | 90.88 | 280 | -- | -- |
| 44.64 | 0.311 | 9.69 | 1.51 | -- | 0.341 | -- | -1.83 | 0.394 | -- | 92.41 | 199 | -- | -- |
| 45.4 | 0.316 | 9.69 | 1.52 | 0.284 | -- | 0.202 | -- | 0.345 | 20.2 | -- | -- | -- | -- |
| 45.48 | 0.316 | 9.69 | 1.51 | 0.283 | -- | -- | -- | 0.344 | 20.5 | -- | -- | -- | -- |
| 47.89 | 0.322 | 9.68 | 1.56 | -- | 0.762 | -- | -- | 0.366 | -- | 94.9 | 238 | -- | -- |
| 95.79 | 0.456 | 9.71 | -- | 0.563 | 0.747 | -- | -- | 0.316 | 18.7 | 89.09 | 276 | -- | -- |
| 49.95 | 0.33 | 9.68 | 1.51 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 105.67 | 0.481 | 9.73 | -- | 0.278 | -- | -- | -- | 0.176 | 20.9 | -- | -- | -- | -- |
| 103.19 | 0.473 | 9.69 | -- | -- | 0.57 | -- | -- | 0.308 | -- | 88.51 | 1510 | -- | -- |
| 110.1 | 0.49 | 9.72 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.66 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 2 | 36.69 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 3 | 36.72 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 6 | 36.75 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 15 | 36.80 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 47 | 36.86 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 57 | 36.88 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 79 | 36.93 | humidity | 90.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 104 | 37.05 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 167 | 37.58 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 173 | 37.62 | humidity | 90.0 | 270 | > th | dose independent | sin | 9 | NA |
| 183 | 37.78 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 190 | 37.85 | humidity | 90.0 | 270 | < th | dose independent | sin | 7 | NA |
| 222 | 38.15 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 238 | 38.26 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 239 | 38.26 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 21 |
| 276 | 38.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 277 | 38.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 290 | 38.45 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 309 | 38.49 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 418 | 38.70 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 466 | 38.76 | humidity | 90.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 484 | 38.79 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 493 | 38.81 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 529 | 38.88 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 542 | 38.91 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 543 | 38.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 551 | 38.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 578 | 38.98 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 604 | 39.03 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 605 | 39.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 606 | 39.03 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 15 |
| 623 | 39.07 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 3 |
| 624 | 39.07 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 643 | 39.10 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 646 | 39.11 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 655 | 39.14 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 684 | 39.18 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 704 | 39.20 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 705 | 39.20 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 796 | 39.30 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 798 | 39.30 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 823 | 39.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 831 | 39.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 890 | 39.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 899 | 39.42 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 909 | 39.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 4 |
| 911 | 39.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 918 | 39.44 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 924 | 39.45 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 929 | 39.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 937 | 39.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 938 | 39.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 940 | 39.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 941 | 39.47 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 956 | 39.48 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 959 | 39.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 975 | 39.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 6 |
| 980 | 39.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 989 | 39.50 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 998 | 39.50 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 16 |