FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0376400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.0434) R2 : 0.331
β1 : -1.75 (0.164) R2dD : 0.192 R2D : 0.0988
β2 : 1.04 (0.104) R2dC : 0.151 R2C : 0.113
β3 : -1.69 (0.209) R2dE : 0.117 R2E : -0.00796
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.223 (0.0972) R2dN8 : 0.0117 R2N8 : -0.027
σ : 0.796
deviance : 292.06
__
_____
C
peak time of C : 21.9
E
wheather : temperature
threshold : 24.2
memory length : 164
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.69 0.802 4.39 -1.63 0.999 -1.74 -0.234 -0.929 -0.209 21.9 24.44 221 -- --
291.71 0.795 4.41 -1.74 1.03 -1.67 -0.351 -- -0.227 21.9 24.2 169 -- --
290.94 0.794 4.39 -1.62 1.04 -1.8 -- -1.06 -0.208 21.9 24.1 193 -- --
292.06 0.796 4.41 -1.75 1.04 -1.69 -- -- -0.223 21.9 24.2 164 -- --
319.51 0.833 4.39 -1.75 -- -1.97 -- -0.525 -0.307 -- 29.63 692 -- --
331.19 0.853 4.34 -1.35 0.97 -- -0.352 -- 0.0632 21.1 -- -- -- --
331.62 0.853 4.34 -1.34 0.971 -- -- -- 0.0635 21.1 -- -- -- --
319.58 0.833 4.4 -1.87 -- -2 -- -- -0.333 -- 29.8 688 -- --
364.45 0.889 4.34 -- 1.01 -0.978 -- -- 0.0748 21.5 24.14 154 -- --
386.07 0.918 4.32 -1.34 -- -- -- -- 0.0581 -- -- -- -- --
378.76 0.91 4.31 -- 0.973 -- -- -- 0.212 21 -- -- -- --
402.07 0.934 4.33 -- -- -1.32 -- -- 0.014 -- 30.88 642 -- --
433.09 0.971 4.28 -- -- -- -- -- 0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.88 temperature 25 270 < th dose dependent rect. 9 22
4 290.80 temperature 25 720 < th dose dependent rect. 7 17
15 291.44 temperature 25 270 < th dose dependent rect. 2 22
16 291.61 temperature 25 90 < th dose dependent rect. 4 21
24 291.96 temperature 25 720 < th dose dependent sin 21 NA
41 293.03 temperature 25 10 < th dose dependent rect. 5 19
61 293.76 temperature 25 270 < th dose dependent no NA NA
100 294.72 temperature 25 270 < th dose dependent rect. 18 23
105 294.82 temperature 25 270 < th dose dependent rect. 15 23
126 295.20 temperature 25 1440 < th dose dependent rect. 18 1
224 296.67 temperature 10 270 > th dose dependent rect. 5 23
238 296.82 temperature 25 10 < th dose dependent rect. 2 23
242 296.87 temperature 25 1440 < th dose dependent rect. 16 4
245 296.87 temperature 10 720 > th dose dependent rect. 7 21
254 296.97 temperature 10 720 > th dose dependent rect. 7 19
318 297.39 temperature 25 10 < th dose dependent rect. 19 23
368 297.61 temperature 25 30 < th dose dependent rect. 23 23
402 297.77 temperature 20 90 < th dose independent rect. 4 21
535 298.50 temperature 25 1440 < th dose dependent rect. 1 1
617 298.91 temperature 25 1440 < th dose dependent no NA NA
625 298.92 temperature 25 1440 < th dose dependent rect. 13 23
646 299.00 temperature 25 1440 < th dose dependent rect. 15 23
683 299.14 temperature 25 1440 < th dose dependent rect. 18 23
731 299.32 temperature 10 720 > th dose dependent rect. 14 14
758 299.44 temperature 10 720 > th dose dependent rect. 16 10
811 299.62 temperature 20 30 > th dose independent rect. 3 23
862 299.85 temperature 20 90 > th dose independent rect. 21 23
910 300.03 temperature 15 270 > th dose dependent rect. 14 23
923 300.07 temperature 20 1440 > th dose independent rect. 9 22
962 300.18 temperature 20 10 < th dose independent rect. 4 20
975 300.22 temperature 10 1440 > th dose dependent rect. 18 1
998 300.30 temperature 20 1440 > th dose independent rect. 2 21