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Os05g0375400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-glucanase precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0722) R2 : 0.716
β1 : -5.56 (0.264) R2dD : 0.286 R2D : 0.263
β2 : 2.14 (0.195) R2dC : 0.0803 R2C : 0.146
β3 : -3.5 (0.18) R2dE : 0.252 R2E : 0.321
β4 : 4.48 (0.873) R2dD*C : 0.0169 R2D*C : 0.00375
β5 : 5.3 (0.75) R2dD*E : 0.032 R2D*E : 0.0258
γ1 : -0.561 (0.154) R2dN8 : 0.0111 R2N8 : -0.00969
σ : 1.36
deviance : 838.34
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C
peak time of C : 6.25
E
wheather : humidity
threshold : 80
memory length : 257
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.22
open length of G : 14

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
838.34 1.36 11.9 -5.56 2.14 -3.5 4.48 5.3 -0.561 6.25 80 257 1.22 14
904.36 1.4 11.9 -5.66 1.76 -4.03 5.71 -- -0.56 7.93 79.45 244 1.67 14.1
880.55 1.38 11.9 -5.54 2.33 -3.13 -- 4.69 -0.653 5.73 79 239 1.12 14.2
944.48 1.43 11.9 -5.55 2.3 -2.92 -- -- -0.628 5.34 77 208 1.35 14.5
987.45 1.46 11.9 -5.38 -- -4.98 -- 4.76 -0.253 -- 81 393 5.93 9.4
1173.14 1.61 11.9 -5.74 4.14 -- -2.21 -- -0.716 3.43 -- -- -- --
1187.27 1.61 11.9 -5.7 4.14 -- -- -- -0.704 3.56 -- -- -- --
1017.86 1.49 11.9 -5.7 -- -4.88 -- -- -0.421 -- 83 416 5.88 9.66
1757.41 1.95 11.8 -- 2.15 -2.95 -- -- -0.0612 5.16 77.92 222 0.933 15
2144.22 2.16 11.9 -5.53 -- -- -- -- -0.594 -- -- -- -- --
2043.47 2.11 11.8 -- 4.03 -- -- -- -0.0696 3.57 -- -- -- --
1785.82 1.97 11.7 -- -- -5.49 -- -- 0.239 -- 79.17 439 3.37 11.7
2949.62 2.53 11.8 -- -- -- -- -- 0.0188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 840.55 humidity 80.0 270 < th dose independent rect. 1 14
9 848.61 humidity 90.0 270 < th dose dependent rect. 1 14
21 863.60 humidity 80.0 270 < th dose independent rect. 9 6
61 896.21 humidity 80.0 270 < th dose independent sin 3 NA
83 910.32 radiation 30.0 90 < th dose dependent sin 18 NA
84 910.89 radiation 10.0 270 > th dose independent rect. 9 6
96 916.64 humidity 90.0 90 < th dose dependent rect. 11 6
97 916.67 radiation 30.0 270 < th dose independent rect. 15 18
152 925.85 humidity 90.0 270 < th dose dependent sin 4 NA
198 933.38 radiation 1.0 30 > th dose independent sin 20 NA
251 939.42 radiation 40.0 270 < th dose dependent rect. 15 19
267 941.70 radiation 1.0 30 < th dose independent sin 19 NA
308 945.38 temperature 20.0 270 > th dose independent rect. 3 7
322 946.66 humidity 50.0 270 > th dose dependent sin 4 NA
332 947.75 wind 7.0 270 < th dose independent rect. 9 6
340 948.34 wind 9.0 270 < th dose dependent rect. 9 6
354 949.65 radiation 20.0 90 < th dose independent sin 17 NA
377 951.93 radiation 40.0 90 < th dose dependent rect. 17 18
389 953.04 temperature 15.0 270 > th dose independent rect. 9 6
397 953.69 radiation 10.0 90 > th dose independent rect. 11 7
421 954.70 temperature 10.0 720 > th dose dependent rect. 22 6
446 956.62 radiation 10.0 90 > th dose independent rect. 9 22
490 958.88 radiation 1.0 90 > th dose dependent sin 18 NA
517 959.84 humidity 80.0 270 > th dose independent sin 3 NA
522 960.13 humidity 90.0 90 < th dose dependent sin 0 NA
543 961.64 humidity 70.0 270 > th dose independent sin 5 NA
557 962.79 radiation 10.0 270 > th dose independent sin 0 NA
566 963.70 radiation 1.0 270 > th dose dependent rect. 4 11
583 964.13 radiation 1.0 270 > th dose dependent rect. 7 8
595 964.93 precipitation 0.1 270 < th dose independent rect. 9 6
596 964.93 precipitation 0.1 270 < th dose dependent rect. 9 6
612 965.78 humidity 50.0 270 > th dose dependent rect. 3 9
641 966.74 temperature 10.0 270 > th dose dependent rect. 16 17
644 966.89 atmosphere 1015.0 270 < th dose independent rect. 9 6
645 966.89 temperature 10.0 270 > th dose independent rect. 15 18
654 967.26 radiation 30.0 90 < th dose dependent rect. 5 23
712 969.32 precipitation 0.1 270 < th dose independent rect. 15 18
713 969.32 precipitation 0.1 270 < th dose dependent rect. 15 18
767 970.77 radiation 40.0 90 < th dose dependent rect. 17 20
772 970.86 atmosphere 995.0 270 > th dose independent rect. 9 6
782 971.33 radiation 40.0 270 < th dose independent sin 19 NA
783 971.33 humidity 50.0 270 > th dose independent rect. 9 6
794 971.92 temperature 10.0 270 > th dose dependent rect. 2 8
801 972.37 wind 9.0 270 < th dose independent rect. 15 18
836 973.52 humidity 80.0 270 > th dose independent rect. 3 11
852 974.13 humidity 80.0 270 > th dose independent rect. 5 9
869 974.67 radiation 1.0 10 > th dose independent rect. 11 8
888 975.17 atmosphere 995.0 270 > th dose independent rect. 15 18
935 976.81 radiation 1.0 10 < th dose dependent rect. 7 13
942 977.01 wind 9.0 90 < th dose dependent rect. 11 6
957 977.13 radiation 1.0 10 < th dose dependent rect. 11 9