Os05g0374500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os05g0374500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.07 | 0.649 | 3.93 | 0.51 | 0.697 | 0.824 | -0.348 | 2.22 | -0.205 | 20.9 | 0.1935 | 5729 | -- | -- |
| 195.12 | 0.651 | 3.91 | 0.408 | 0.729 | 0.787 | -0.341 | -- | -0.189 | 20.8 | 1.202 | 5698 | -- | -- |
| 191.45 | 0.644 | 3.93 | 0.522 | 0.701 | 0.826 | -- | 2.21 | -0.204 | 20.8 | 0.2921 | 5729 | -- | -- |
| 194.61 | 0.65 | 3.92 | 0.441 | 0.702 | 0.846 | -- | -- | -0.23 | 20.7 | 2.967 | 5690 | -- | -- |
| 219.2 | 0.69 | 3.92 | 0.539 | -- | 0.873 | -- | 2.32 | -0.207 | -- | 0.3873 | 5500 | -- | -- |
| 209.46 | 0.678 | 3.89 | 0.23 | 0.705 | -- | -0.339 | -- | -0.122 | 21 | -- | -- | -- | -- |
| 209.81 | 0.678 | 3.89 | 0.243 | 0.709 | -- | -- | -- | -0.121 | 20.8 | -- | -- | -- | -- |
| 222.87 | 0.695 | 3.9 | 0.458 | -- | 0.867 | -- | -- | -0.234 | -- | 3.167 | 5520 | -- | -- |
| 198.98 | 0.657 | 3.92 | -- | 0.71 | 0.687 | -- | -- | -0.258 | 20.8 | 3.005 | 6223 | -- | -- |
| 238.43 | 0.722 | 3.87 | 0.242 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 211.37 | 0.68 | 3.9 | -- | 0.709 | -- | -- | -- | -0.148 | 20.8 | -- | -- | -- | -- |
| 226.26 | 0.701 | 3.91 | -- | -- | 0.674 | -- | -- | -0.301 | -- | 4.612 | 11225 | -- | -- |
| 239.98 | 0.723 | 3.88 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.91 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 2 | 187.95 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 3 | 187.95 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 10 |
| 6 | 188.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 7 | 188.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 16 |
| 8 | 188.04 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 14 |
| 10 | 188.04 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 14 |
| 13 | 188.09 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 14 | 188.10 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 16 |
| 15 | 188.12 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 14 |
| 76 | 188.41 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 151 | 188.83 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 186 | 189.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 193 | 189.27 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 18 | NA |
| 194 | 189.27 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 18 | NA |
| 202 | 189.34 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 18 | NA |
| 211 | 189.46 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 213 | 189.46 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 215 | 189.47 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 223 | 189.50 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 224 | 189.52 | wind | 5.0 | 4320 | > th | dose independent | rect. | 19 | 16 |
| 228 | 189.58 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 235 | 189.60 | humidity | 70.0 | 720 | < th | dose independent | rect. | 15 | 20 |
| 239 | 189.62 | humidity | 70.0 | 720 | < th | dose independent | sin | 10 | NA |
| 251 | 189.76 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 19 | 10 |
| 263 | 189.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 264 | 189.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 266 | 189.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 268 | 189.87 | wind | 5.0 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 269 | 189.87 | wind | 5.0 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 272 | 189.88 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 303 | 190.11 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 305 | 190.11 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 312 | 190.16 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 319 | 190.19 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 320 | 190.20 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 20 |
| 322 | 190.24 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 327 | 190.26 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 7 |
| 352 | 190.43 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 389 | 190.55 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 21 |
| 394 | 190.58 | humidity | 70.0 | 270 | > th | dose independent | sin | 12 | NA |
| 424 | 190.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 438 | 190.81 | humidity | 70.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 447 | 190.92 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 16 |
| 449 | 190.94 | wind | 5.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 454 | 190.95 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 22 |
| 469 | 191.01 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 472 | 191.02 | wind | 5.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 478 | 191.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 479 | 191.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 480 | 191.06 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 481 | 191.07 | temperature | 30.0 | 720 | < th | dose independent | sin | 10 | NA |
| 509 | 191.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 513 | 191.14 | humidity | 70.0 | 270 | < th | dose independent | sin | 12 | NA |
| 544 | 191.25 | temperature | 30.0 | 720 | < th | dose independent | sin | 18 | NA |
| 560 | 191.31 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 572 | 191.35 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 584 | 191.38 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 585 | 191.40 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 595 | 191.44 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 606 | 191.48 | humidity | 70.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 610 | 191.48 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 20 |
| 617 | 191.50 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 19 |
| 708 | 191.70 | wind | 5.0 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 712 | 191.71 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 719 | 191.73 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 748 | 191.78 | wind | 5.0 | 4320 | > th | dose independent | rect. | 19 | 11 |
| 749 | 191.78 | humidity | 80.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 774 | 191.82 | wind | 5.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 900 | 192.03 | temperature | 30.0 | 720 | > th | dose independent | sin | 10 | NA |
| 943 | 192.09 | wind | 5.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 944 | 192.09 | wind | 1.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 965 | 192.14 | wind | 5.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 966 | 192.14 | wind | 5.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 985 | 192.16 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 987 | 192.16 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |