Os05g0374000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0374000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.39 | 0.4 | 7.33 | -0.676 | 0.473 | -1.21 | 0.145 | -1.49 | 0.395 | 4.06 | 24.98 | 1366 | -- | -- |
| 74.48 | 0.402 | 7.36 | -0.944 | 0.446 | -1.07 | 0.309 | -- | 0.33 | 4.46 | 25.34 | 1207 | -- | -- |
| 72.34 | 0.396 | 7.33 | -0.693 | 0.459 | -1.19 | -- | -1.39 | 0.394 | 4.09 | 24.77 | 1278 | -- | -- |
| 74.72 | 0.403 | 7.36 | -0.937 | 0.461 | -1.05 | -- | -- | 0.338 | 4.2 | 25.3 | 1249 | -- | -- |
| 83.35 | 0.425 | 7.34 | -0.685 | -- | -1.28 | -- | -1.45 | 0.386 | -- | 25.1 | 1168 | -- | -- |
| 90.09 | 0.445 | 7.31 | -0.62 | 0.527 | -- | 0.189 | -- | 0.564 | 3.92 | -- | -- | -- | -- |
| 90.2 | 0.445 | 7.31 | -0.622 | 0.527 | -- | -- | -- | 0.563 | 3.87 | -- | -- | -- | -- |
| 85.58 | 0.431 | 7.37 | -0.947 | -- | -1.16 | -- | -- | 0.318 | -- | 26.18 | 1162 | -- | -- |
| 94.41 | 0.453 | 7.32 | -- | 0.473 | -0.61 | -- | -- | 0.52 | 4.24 | 25.4 | 1131 | -- | -- |
| 105.46 | 0.48 | 7.31 | -0.6 | -- | -- | -- | -- | 0.577 | -- | -- | -- | -- | -- |
| 100.4 | 0.469 | 7.3 | -- | 0.515 | -- | -- | -- | 0.633 | 3.88 | -- | -- | -- | -- |
| 105.95 | 0.479 | 7.33 | -- | -- | -0.724 | -- | -- | 0.508 | -- | 26.1 | 1137 | -- | -- |
| 114.97 | 0.5 | 7.3 | -- | -- | -- | -- | -- | 0.644 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.69 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 2 | 67.85 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 3 | 67.93 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 6 | 68.27 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 11 | 68.52 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 13 | 68.79 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 34 | 69.50 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 37 | 69.55 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 41 | 69.63 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 48 | 69.71 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 57 | 69.86 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 69 | 69.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 76 | 69.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 14 |
| 106 | 70.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 11 |
| 117 | 70.17 | wind | 1 | 14400 | < th | dose dependent | sin | 6 | NA |
| 144 | 70.32 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 167 | 70.42 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 189 | 70.50 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 191 | 70.52 | wind | 1 | 14400 | < th | dose independent | sin | 5 | NA |
| 203 | 70.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 219 | 70.60 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 228 | 70.63 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 231 | 70.64 | humidity | 70 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 236 | 70.68 | wind | 1 | 14400 | > th | dose independent | sin | 5 | NA |
| 253 | 70.73 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 266 | 70.77 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 270 | 70.78 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 280 | 70.81 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 292 | 70.85 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 306 | 70.92 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 426 | 71.24 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 452 | 71.32 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 471 | 71.37 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 16 |
| 479 | 71.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 486 | 71.40 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 493 | 71.41 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 510 | 71.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 519 | 71.44 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 522 | 71.45 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 545 | 71.48 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 550 | 71.49 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 554 | 71.49 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 577 | 71.51 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 16 |
| 592 | 71.53 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 615 | 71.57 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 651 | 71.64 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 19 | NA |
| 727 | 71.75 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 740 | 71.77 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 19 | NA |
| 742 | 71.77 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 763 | 71.80 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 780 | 71.81 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 793 | 71.83 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 800 | 71.84 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 835 | 71.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 850 | 71.89 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 870 | 71.92 | humidity | 60 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 925 | 71.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 978 | 72.04 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 982 | 72.04 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 983 | 72.05 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |