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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0372900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0548) R2 : 0.435
β1 : 1.59 (0.2) R2dD : 0.0839 R2D : 0.0382
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.02 (0.255) R2dE : 0.464 R2E : -0.0838
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.8 (1.14) R2dD*E : 0.43 R2D*E : -0.0592
γ1 : 0.11 (0.119) R2dN8 : 0.00149 R2N8 : -0.012
σ : 1.01
deviance : 469.22
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.783
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 3.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
457.72 1.01 3.45 1.63 0.388 -4.15 1.41 -18.2 0.112 18 6.777 4323 19 3.96
656.06 1.19 3.44 1.28 0.525 -2.23 1.5 -- 0.0403 18.1 8 4322 19 3.94
462.14 1 3.43 1.63 0.382 -4.07 -- -18 0.133 18.2 6.787 4322 19 3.9
602.41 1.14 3.44 1.62 0.244 -2.02 -- -- 0.327 17.6 8.026 4318 18.9 2.78
469.22 1.01 3.44 1.59 -- -4.02 -- -17.8 0.11 -- 6.783 4320 19 3.9
781.06 1.31 3.39 1.17 0.32 -- 1.18 -- -0.0969 17.1 -- -- -- --
784.52 1.31 3.38 1.17 0.331 -- -- -- -0.0915 17.5 -- -- -- --
586.75 1.13 3.44 1.03 -- -2.65 -- -- 0.332 -- 8.002 4318 18.9 2.83
607.33 1.15 3.44 -- 0.37 -2.75 -- -- 0.326 18.8 8.087 4319 18.9 2.78
790.24 1.31 3.38 1.16 -- -- -- -- -0.0996 -- -- -- -- --
820.68 1.34 3.41 -- 0.312 -- -- -- -0.222 17.6 -- -- -- --
590.23 1.13 3.45 -- -- -2.7 -- -- 0.0151 -- 8.06 4318 18.9 2.72
825.74 1.34 3.41 -- -- -- -- -- -0.228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 470.68 wind 5 4320 > th dose dependent rect. 20 3
3 474.57 wind 7 4320 < th dose independent rect. 19 4
16 479.75 wind 7 4320 > th dose independent rect. 18 4
144 505.96 atmosphere 995 14400 > th dose independent rect. 17 3
149 506.62 atmosphere 995 14400 < th dose independent rect. 17 1
150 506.62 atmosphere 995 14400 < th dose dependent rect. 17 1
185 511.27 humidity 90 1440 < th dose dependent rect. 3 1
236 519.25 atmosphere 995 14400 > th dose independent rect. 7 13
350 528.27 humidity 90 1440 < th dose dependent rect. 23 8
356 528.69 humidity 90 1440 < th dose dependent rect. 2 5
374 530.10 humidity 70 1440 > th dose dependent rect. 1 6
377 530.40 humidity 80 1440 < th dose independent rect. 22 1
454 536.95 humidity 70 1440 > th dose dependent rect. 5 1
528 540.50 atmosphere 995 14400 > th dose independent sin 22 NA
530 540.64 atmosphere 995 14400 < th dose independent sin 22 NA
546 541.45 atmosphere 995 14400 > th dose independent rect. 20 20
590 543.70 atmosphere 995 14400 < th dose dependent sin 23 NA
591 543.70 radiation 1 14400 < th dose dependent rect. 23 3
594 543.89 humidity 70 1440 > th dose dependent rect. 3 1
609 544.34 atmosphere 995 14400 > th dose independent sin 3 NA
617 544.78 radiation 1 14400 < th dose dependent rect. 23 5
622 544.91 radiation 1 14400 < th dose dependent rect. 19 9
660 545.89 atmosphere 995 14400 < th dose independent sin 3 NA
732 547.36 radiation 1 14400 < th dose dependent rect. 20 6
920 550.12 atmosphere 995 14400 > th dose independent no NA NA
922 550.12 atmosphere 995 14400 > th dose independent rect. 12 23
923 550.13 atmosphere 995 14400 > th dose independent rect. 10 23
924 550.13 atmosphere 995 14400 > th dose independent rect. 14 23
938 550.21 atmosphere 995 14400 > th dose independent rect. 12 21
946 550.35 atmosphere 1005 14400 < th dose independent rect. 6 2
949 550.48 humidity 90 1440 < th dose dependent rect. 5 1
976 550.85 atmosphere 1005 14400 > th dose independent rect. 7 1