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Os05g0372800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0136) R2 : 0.719
β1 : -1.01 (0.0498) R2dD : 0.263 R2D : 0.275
β2 : 0.859 (0.0325) R2dC : 0.433 R2C : 0.421
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.029) R2dN8 : 0.0149 R2N8 : 0.0312
σ : 0.256
deviance : 29.78
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.95 0.239 11.4 -1 0.373 0.481 0.0462 0.0644 0.138 21.4 11.79 10 -- --
25.87 0.239 11.4 -0.999 0.388 0.458 0.128 -- 0.132 21.7 11.79 10 -- --
25.87 0.239 11.4 -1 0.377 0.47 -- 0.0952 0.133 21.6 11.79 10 -- --
25.93 0.239 11.4 -1 0.375 0.472 -- -- 0.132 21.5 11.79 10 -- --
29.04 0.251 11.4 -0.999 -- 0.691 -- 0.0994 0.137 -- 9.666 4 -- --
29.56 0.255 11.4 -0.999 0.86 -- 0.227 -- 0.124 22.8 -- -- -- --
29.78 0.256 11.4 -1.01 0.859 -- -- -- 0.123 22.8 -- -- -- --
28.91 0.25 11.4 -1.02 -- 0.696 -- -- 0.131 -- 9.864 3 -- --
52.39 0.337 11.4 -- 0.432 0.482 -- -- 0.242 21.3 22.89 10 -- --
75.51 0.406 11.4 -0.991 -- -- -- -- 0.129 -- -- -- -- --
56.59 0.352 11.4 -- 0.852 -- -- -- 0.235 22.7 -- -- -- --
56.32 0.35 11.4 -- -- 0.675 -- -- 0.254 -- 7.581 4 -- --
101.41 0.47 11.4 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.43 radiation 10.0 10 < th dose independent rect. 7 22
2 25.43 radiation 20.0 10 < th dose dependent rect. 7 23
7 25.73 radiation 20.0 10 < th dose dependent rect. 9 20
8 25.74 temperature 10.0 270 > th dose dependent rect. 4 11
14 25.81 radiation 30.0 90 < th dose dependent rect. 7 22
23 25.89 radiation 10.0 10 < th dose dependent rect. 16 23
33 26.03 radiation 10.0 10 < th dose dependent rect. 13 23
34 26.04 radiation 10.0 10 < th dose dependent no NA NA
35 26.04 radiation 40.0 270 < th dose dependent rect. 7 12
40 26.07 temperature 10.0 720 > th dose dependent rect. 4 3
41 26.08 radiation 40.0 270 < th dose independent rect. 7 12
42 26.08 radiation 40.0 90 < th dose dependent rect. 9 10
46 26.09 radiation 1.0 10 > th dose dependent rect. 12 23
50 26.11 radiation 10.0 10 < th dose dependent rect. 11 23
65 26.16 radiation 10.0 10 < th dose dependent rect. 18 23
75 26.19 radiation 10.0 30 < th dose independent rect. 8 11
99 26.29 radiation 1.0 1440 < th dose dependent rect. 18 11
103 26.31 radiation 1.0 1440 < th dose dependent rect. 18 9
108 26.32 radiation 1.0 1440 < th dose dependent rect. 18 1
109 26.32 radiation 1.0 1440 < th dose dependent rect. 18 7
117 26.34 radiation 30.0 10 < th dose dependent rect. 9 13
118 26.35 radiation 1.0 1440 < th dose dependent rect. 18 3
130 26.38 atmosphere 1000.0 270 > th dose independent rect. 7 12
142 26.40 radiation 10.0 10 < th dose independent rect. 8 15
159 26.45 radiation 10.0 10 < th dose dependent rect. 18 20
165 26.47 wind 1.0 43200 < th dose dependent rect. 6 1
167 26.48 radiation 20.0 720 < th dose dependent rect. 9 1
176 26.49 temperature 25.0 10 > th dose dependent rect. 23 17
184 26.50 radiation 10.0 10 < th dose dependent rect. 16 20
188 26.51 radiation 30.0 10 < th dose dependent sin 19 NA
195 26.52 radiation 10.0 10 < th dose dependent rect. 8 6
223 26.55 radiation 40.0 10 < th dose dependent sin 16 NA
234 26.56 radiation 40.0 10 < th dose dependent sin 13 NA
236 26.56 radiation 10.0 10 < th dose dependent sin 23 NA
260 26.59 radiation 10.0 30 < th dose independent rect. 8 6
318 26.64 temperature 30.0 270 < th dose independent rect. 24 12
326 26.65 radiation 40.0 270 < th dose independent rect. 23 12
350 26.67 radiation 1.0 10 > th dose dependent sin 13 NA
367 26.69 radiation 10.0 10 < th dose independent sin 20 NA
370 26.69 radiation 20.0 30 > th dose independent rect. 12 22
384 26.71 radiation 20.0 720 < th dose independent rect. 9 1
394 26.71 temperature 20.0 30 > th dose dependent rect. 16 13
396 26.71 radiation 1.0 10 > th dose dependent rect. 12 19
402 26.72 radiation 40.0 720 < th dose dependent rect. 7 4
413 26.73 atmosphere 1000.0 720 > th dose independent rect. 7 5
453 26.76 temperature 25.0 90 > th dose dependent rect. 19 22
456 26.77 precipitation 0.1 720 < th dose independent rect. 15 4
463 26.77 precipitation 0.1 720 < th dose dependent rect. 15 4
554 26.83 radiation 30.0 90 < th dose independent sin 17 NA
556 26.83 wind 1.0 43200 < th dose independent rect. 4 1
558 26.83 temperature 30.0 10 < th dose independent rect. 2 12
572 26.84 radiation 10.0 14400 > th dose independent rect. 6 1
573 26.84 precipitation 0.1 43200 < th dose independent rect. 24 2
576 26.84 precipitation 0.1 43200 < th dose dependent rect. 24 2
600 26.85 radiation 10.0 10 < th dose dependent rect. 18 18
605 26.86 radiation 20.0 30 < th dose independent sin 13 NA
607 26.86 radiation 40.0 720 < th dose independent rect. 7 4
643 26.88 wind 1.0 43200 < th dose independent rect. 2 6
646 26.88 radiation 40.0 720 < th dose independent rect. 16 19
651 26.88 wind 1.0 43200 < th dose dependent rect. 4 4
652 26.88 wind 1.0 43200 < th dose dependent rect. 2 6
661 26.89 precipitation 0.1 43200 > th dose independent rect. 1 1
678 26.89 precipitation 0.1 43200 > th dose dependent rect. 1 1
710 26.91 wind 1.0 43200 < th dose independent rect. 2 3
713 26.91 precipitation 0.1 720 < th dose independent rect. 24 19
723 26.91 precipitation 0.1 720 < th dose dependent rect. 24 19
730 26.92 radiation 20.0 720 < th dose independent rect. 7 5
731 26.92 radiation 20.0 270 > th dose independent rect. 7 8
756 26.93 wind 1.0 43200 > th dose independent rect. 2 6
802 26.96 temperature 30.0 30 < th dose independent rect. 2 10
804 26.96 precipitation 0.1 720 < th dose independent rect. 7 12
809 26.96 temperature 20.0 43200 > th dose dependent rect. 4 1
810 26.96 humidity 50.0 43200 > th dose dependent rect. 11 1
817 26.96 precipitation 0.1 720 < th dose dependent rect. 7 12
826 26.96 radiation 10.0 10 < th dose dependent rect. 1 23
829 26.97 humidity 70.0 43200 > th dose independent rect. 9 1
830 26.97 temperature 25.0 43200 > th dose independent rect. 9 2
833 26.97 radiation 20.0 4320 < th dose dependent rect. 10 1
847 26.98 wind 3.0 14400 > th dose independent rect. 12 2
859 26.98 radiation 1.0 270 > th dose dependent rect. 5 10
885 26.99 wind 1.0 43200 > th dose independent rect. 4 2
886 26.99 temperature 25.0 43200 < th dose independent rect. 9 2
887 26.99 radiation 20.0 4320 < th dose independent rect. 10 2
929 27.00 humidity 90.0 43200 < th dose dependent rect. 11 1
944 27.00 radiation 40.0 270 < th dose dependent rect. 21 22
950 27.01 wind 1.0 43200 < th dose independent rect. 4 3
955 27.01 temperature 25.0 43200 > th dose independent rect. 6 7
967 27.01 humidity 50.0 720 > th dose dependent rect. 3 4
982 27.02 wind 1.0 43200 > th dose independent rect. 4 4
985 27.02 temperature 25.0 43200 < th dose independent rect. 6 7