Os05g0371600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os05g0371600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.76 | 0.674 | 3.46 | -1.95 | 0.705 | 1.69 | -1.31 | -7.2 | -0.242 | 16.9 | 25.82 | 26 | -- | -- |
| 220.62 | 0.692 | 3.37 | -1.25 | 0.763 | 1.1 | -2.08 | -- | -0.0679 | 16.5 | 25.8 | 27 | -- | -- |
| 209.12 | 0.674 | 3.47 | -1.99 | 0.686 | 1.7 | -- | -7.97 | -0.246 | 16.5 | 25.84 | 37 | -- | -- |
| 231.3 | 0.708 | 3.37 | -1.21 | 0.811 | 0.909 | -- | -- | -0.0583 | 16.2 | 25.8 | 27 | -- | -- |
| 227.95 | 0.703 | 3.49 | -2.18 | -- | 2.13 | -- | -7.56 | -0.362 | -- | 25.09 | 43 | -- | -- |
| 236.76 | 0.721 | 3.36 | -1.07 | 1.13 | -- | -1.52 | -- | -0.0117 | 16.1 | -- | -- | -- | -- |
| 243.26 | 0.73 | 3.36 | -1.09 | 1.12 | -- | -- | -- | -0.0203 | 15.9 | -- | -- | -- | -- |
| 254.87 | 0.744 | 3.38 | -1.35 | -- | 1.54 | -- | -- | -0.155 | -- | 25 | 42 | -- | -- |
| 268.93 | 0.764 | 3.34 | -- | 0.939 | 0.603 | -- | -- | 0.0963 | 16 | 26.4 | 32 | -- | -- |
| 312.08 | 0.825 | 3.36 | -1.13 | -- | -- | -- | -- | -0.0502 | -- | -- | -- | -- | -- |
| 274.47 | 0.775 | 3.34 | -- | 1.14 | -- | -- | -- | 0.101 | 15.9 | -- | -- | -- | -- |
| 301.92 | 0.809 | 3.35 | -- | -- | 1.36 | -- | -- | 0.00424 | -- | 25.1 | 27 | -- | -- |
| 346.02 | 0.868 | 3.33 | -- | -- | -- | -- | -- | 0.0757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 2 | 194.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 8 | 195.38 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 6 |
| 12 | 196.97 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 4 |
| 14 | 197.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 20 | 197.16 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 22 | 197.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 23 | 197.25 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 6 |
| 35 | 198.25 | temperature | 25 | 30 | > th | dose dependent | sin | 20 | NA |
| 77 | 199.50 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 224 | 204.06 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 10 |
| 289 | 204.98 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 22 |
| 390 | 206.23 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 7 |
| 408 | 206.27 | radiation | 1 | 10 | < th | dose dependent | sin | 18 | NA |
| 427 | 206.47 | radiation | 1 | 30 | > th | dose independent | sin | 18 | NA |
| 435 | 206.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 443 | 206.53 | radiation | 1 | 30 | < th | dose independent | sin | 17 | NA |
| 495 | 206.72 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 5 |
| 514 | 206.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 519 | 206.93 | radiation | 20 | 30 | < th | dose dependent | sin | 15 | NA |
| 628 | 207.61 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 6 |
| 649 | 207.71 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 652 | 207.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 656 | 207.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 971 | 209.33 | humidity | 90 | 30 | < th | dose dependent | rect. | 12 | 6 |