Os05g0371500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0371500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.42 | 0.246 | 11.8 | -0.343 | 0.391 | -0.278 | 0.245 | -0.137 | -0.111 | 20.9 | 31.33 | 1237 | -- | -- |
| 27.42 | 0.244 | 11.8 | -0.335 | 0.399 | -0.29 | 0.255 | -- | -0.113 | 20.9 | 31.61 | 1234 | -- | -- |
| 27.6 | 0.245 | 11.8 | -0.34 | 0.388 | -0.285 | -- | -0.0521 | -0.108 | 20.9 | 31.89 | 1237 | -- | -- |
| 27.6 | 0.245 | 11.8 | -0.332 | 0.388 | -0.291 | -- | -- | -0.11 | 20.9 | 32.01 | 1235 | -- | -- |
| 36.21 | 0.28 | 11.8 | -0.358 | -- | -0.269 | -- | -0.105 | -0.119 | -- | 31.7 | 1273 | -- | -- |
| 31.56 | 0.263 | 11.8 | -0.396 | 0.377 | -- | 0.223 | -- | -0.0562 | 20.5 | -- | -- | -- | -- |
| 31.72 | 0.264 | 11.8 | -0.403 | 0.376 | -- | -- | -- | -0.0562 | 20.5 | -- | -- | -- | -- |
| 36.19 | 0.28 | 11.8 | -0.336 | -- | -0.265 | -- | -- | -0.111 | -- | 32.1 | 1273 | -- | -- |
| 30.42 | 0.257 | 11.8 | -- | 0.404 | -0.335 | -- | -- | -0.0976 | 20.9 | 31.35 | 1263 | -- | -- |
| 39.65 | 0.294 | 11.8 | -0.404 | -- | -- | -- | -- | -0.0598 | -- | -- | -- | -- | -- |
| 36 | 0.281 | 11.8 | -- | 0.378 | -- | -- | -- | -0.0113 | 20.4 | -- | -- | -- | -- |
| 38.72 | 0.29 | 11.8 | -- | -- | -0.299 | -- | -- | -0.0684 | -- | 29.8 | 5731 | -- | -- |
| 43.96 | 0.309 | 11.8 | -- | -- | -- | -- | -- | -0.0149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.17 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 2 | 25.37 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 8 | 25.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 9 | 25.55 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 11 | 25.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 24 | 25.85 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 30 | 26.04 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 39 | 26.12 | wind | 3.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 46 | 26.17 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 48 | 26.21 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 55 | 26.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 64 | 26.36 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 73 | 26.40 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 74 | 26.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 75 | 26.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 79 | 26.43 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 81 | 26.44 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 90 | 26.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 93 | 26.48 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 95 | 26.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 107 | 26.51 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 110 | 26.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 117 | 26.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 133 | 26.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 134 | 26.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 136 | 26.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 145 | 26.61 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 146 | 26.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 157 | 26.64 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 160 | 26.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 161 | 26.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 162 | 26.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 163 | 26.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 165 | 26.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 166 | 26.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 181 | 26.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 198 | 26.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 200 | 26.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 206 | 26.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 222 | 26.75 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 228 | 26.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 245 | 26.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 247 | 26.81 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 253 | 26.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 265 | 26.85 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 267 | 26.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 275 | 26.87 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 282 | 26.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 6 |
| 286 | 26.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 287 | 26.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 308 | 26.92 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 313 | 26.93 | wind | 3.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 314 | 26.93 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 318 | 26.93 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 329 | 26.95 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 344 | 26.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 346 | 26.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 376 | 26.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 377 | 26.99 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 386 | 27.00 | radiation | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 396 | 27.01 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 399 | 27.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 400 | 27.01 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 408 | 27.02 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 414 | 27.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 416 | 27.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 418 | 27.03 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 420 | 27.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 421 | 27.03 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 422 | 27.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 426 | 27.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 440 | 27.04 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 490 | 27.07 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 495 | 27.07 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 517 | 27.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 521 | 27.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 538 | 27.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 574 | 27.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 576 | 27.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 577 | 27.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 580 | 27.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 581 | 27.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 584 | 27.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 593 | 27.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 630 | 27.14 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 641 | 27.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 646 | 27.14 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 656 | 27.15 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 671 | 27.16 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 677 | 27.16 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 12 |
| 680 | 27.16 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 683 | 27.16 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 746 | 27.19 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 748 | 27.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 755 | 27.20 | radiation | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 786 | 27.21 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 791 | 27.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 801 | 27.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 877 | 27.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 907 | 27.26 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 913 | 27.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 931 | 27.27 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 932 | 27.27 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 939 | 27.27 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 965 | 27.29 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 973 | 27.30 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 7 |