Os05g0370900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0370900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.18 | 0.737 | 5.29 | 0.159 | 1.03 | 1.01 | -0.586 | 1.97 | -0.812 | 12.1 | 22.46 | 2232 | -- | -- |
| 255.04 | 0.744 | 5.23 | 0.816 | 1.06 | 1.04 | -0.408 | -- | -0.677 | 12.3 | 22.4 | 2206 | -- | -- |
| 247.54 | 0.733 | 5.28 | 0.194 | 1.04 | 1.03 | -- | 1.85 | -0.806 | 12.1 | 22.39 | 2205 | -- | -- |
| 255.26 | 0.744 | 5.22 | 0.838 | 1.04 | 1.03 | -- | -- | -0.643 | 12.1 | 22.31 | 2223 | -- | -- |
| 307.24 | 0.816 | 5.29 | 0.158 | -- | 1.13 | -- | 2.01 | -0.738 | -- | 23.62 | 2368 | -- | -- |
| 293.29 | 0.803 | 5.3 | 0.446 | 1.12 | -- | -0.373 | -- | -1.01 | 12.1 | -- | -- | -- | -- |
| 293.89 | 0.803 | 5.3 | 0.431 | 1.13 | -- | -- | -- | -1.01 | 12 | -- | -- | -- | -- |
| 299.96 | 0.807 | 5.21 | 0.849 | -- | 1.35 | -- | -- | -0.52 | -- | 24.71 | 902 | -- | -- |
| 273.56 | 0.77 | 5.2 | -- | 1.08 | 0.933 | -- | -- | -0.67 | 12 | 22.5 | 2214 | -- | -- |
| 373.73 | 0.903 | 5.32 | 0.396 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 298.78 | 0.809 | 5.31 | -- | 1.12 | -- | -- | -- | -1.06 | 12 | -- | -- | -- | -- |
| 317.41 | 0.83 | 5.24 | -- | -- | 1.17 | -- | -- | -0.676 | -- | 24.78 | 895 | -- | -- |
| 377.86 | 0.907 | 5.33 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.26 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 3 | 245.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 20 | 246.01 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 52 | 246.68 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 77 | 247.06 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 87 | 247.22 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 93 | 247.29 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 97 | 247.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 115 | 247.61 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 120 | 247.65 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 163 | 248.13 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 168 | 248.22 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 180 | 248.38 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 192 | 248.47 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 200 | 248.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 210 | 248.62 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 215 | 248.67 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 231 | 248.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 232 | 248.74 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 367 | 249.23 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 405 | 249.40 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 433 | 249.54 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 467 | 249.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 529 | 249.95 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 531 | 249.97 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 532 | 249.97 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 539 | 250.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 547 | 250.02 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 550 | 250.04 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 556 | 250.05 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 596 | 250.16 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 614 | 250.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 615 | 250.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 657 | 250.31 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 719 | 250.49 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 768 | 250.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 800 | 250.62 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 803 | 250.63 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 855 | 250.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 872 | 250.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 899 | 250.85 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 23 |