Os05g0370200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0370200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.64 | 0.338 | 10.6 | -0.886 | 1.1 | 0.378 | -1.01 | -1.89 | -0.105 | 21.1 | 9.997 | 4204 | -- | -- |
| 56.27 | 0.349 | 10.6 | -0.886 | 1.1 | 0.377 | -1.01 | -- | -0.106 | 21.1 | 9.99 | 14264 | -- | -- |
| 54.66 | 0.344 | 10.6 | -0.88 | 1.1 | 0.382 | -- | -1.66 | -0.104 | 21.1 | 9.95 | 4343 | -- | -- |
| 57.82 | 0.354 | 10.6 | -0.853 | 1.09 | 0.405 | -- | -- | -0.0783 | 21.1 | 9.982 | 14863 | -- | -- |
| 98.3 | 0.464 | 10.6 | -0.808 | -- | 0.535 | -- | -0.561 | -0.168 | -- | 9.95 | 4343 | -- | -- |
| 59.41 | 0.361 | 10.6 | -0.739 | 1.08 | -- | -0.868 | -- | -0.108 | 21 | -- | -- | -- | -- |
| 61.94 | 0.369 | 10.6 | -0.711 | 1.08 | -- | -- | -- | -0.108 | 21.2 | -- | -- | -- | -- |
| 100.3 | 0.468 | 10.6 | -0.761 | -- | 0.533 | -- | -- | -0.157 | -- | 9.998 | 5968 | -- | -- |
| 70.71 | 0.392 | 10.6 | -- | 1.15 | 0.316 | -- | -- | 0.0599 | 21.1 | 40.76 | 2646 | -- | -- |
| 129.33 | 0.531 | 10.6 | -0.708 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 75.26 | 0.406 | 10.6 | -- | 1.08 | -- | -- | -- | -0.0289 | 21.1 | -- | -- | -- | -- |
| 115.53 | 0.502 | 10.6 | -- | -- | 0.513 | -- | -- | -0.0713 | -- | 9.998 | 5968 | -- | -- |
| 142.54 | 0.557 | 10.6 | -- | -- | -- | -- | -- | -0.0352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.74 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 2 | 48.06 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 3 | 48.07 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 19 | 48.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 49 | 48.38 | radiation | 20.0 | 720 | < th | dose independent | rect. | 5 | 5 |
| 57 | 48.39 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 80 | 48.43 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 81 | 48.43 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 88 | 48.44 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 94 | 48.45 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 102 | 48.46 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 122 | 48.48 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 129 | 48.49 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 130 | 48.49 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 14 | NA |
| 307 | 48.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 337 | 48.85 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 403 | 48.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 405 | 48.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 417 | 48.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 451 | 49.03 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 453 | 49.03 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 455 | 49.03 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |
| 481 | 49.09 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 492 | 49.10 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 512 | 49.14 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 516 | 49.15 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 573 | 49.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 659 | 49.41 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 678 | 49.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 679 | 49.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 682 | 49.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 686 | 49.47 | radiation | 10.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 693 | 49.49 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 715 | 49.52 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 716 | 49.52 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 771 | 49.57 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 772 | 49.57 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 777 | 49.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 778 | 49.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 779 | 49.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 801 | 49.63 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 809 | 49.63 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 816 | 49.63 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 821 | 49.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 823 | 49.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 830 | 49.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 842 | 49.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 844 | 49.68 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 847 | 49.68 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 851 | 49.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 856 | 49.69 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 857 | 49.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 871 | 49.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 872 | 49.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 876 | 49.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 11 |
| 877 | 49.72 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 883 | 49.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 889 | 49.73 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 893 | 49.74 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 901 | 49.75 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 906 | 49.75 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 913 | 49.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 927 | 49.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 932 | 49.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 934 | 49.78 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 951 | 49.79 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 994 | 49.80 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 13 |