Os05g0370000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0370000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.6 | 0.375 | 8.38 | 1.75 | 2.74 | 1.69 | -0.66 | -0.558 | -0.011 | 18.1 | 23.97 | 16 | -- | -- |
| 63.89 | 0.372 | 8.39 | 1.69 | 2.75 | 1.79 | -0.623 | -- | -0.0329 | 18.1 | 23.69 | 38 | -- | -- |
| 64.55 | 0.374 | 8.39 | 1.74 | 2.74 | 1.72 | -- | -0.442 | -0.0207 | 18.1 | 23.83 | 29 | -- | -- |
| 64.85 | 0.375 | 8.39 | 1.69 | 2.74 | 1.79 | -- | -- | -0.0365 | 18.1 | 23.68 | 37 | -- | -- |
| 449.63 | 0.993 | 8.35 | 1.61 | -- | 1.47 | -- | -0.663 | -0.143 | -- | 23.13 | 29 | -- | -- |
| 106.57 | 0.484 | 8.46 | 1.28 | 2.69 | -- | -0.585 | -- | -0.303 | 18.5 | -- | -- | -- | -- |
| 107.42 | 0.485 | 8.46 | 1.29 | 2.69 | -- | -- | -- | -0.305 | 18.5 | -- | -- | -- | -- |
| 450.31 | 0.993 | 8.36 | 1.54 | -- | 1.55 | -- | -- | -0.156 | -- | 23.14 | 14 | -- | -- |
| 132.53 | 0.536 | 8.46 | -- | 2.68 | 1.23 | -- | -- | -0.331 | 18.3 | 22.66 | 10 | -- | -- |
| 484.15 | 1.03 | 8.41 | 1.23 | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
| 151.47 | 0.576 | 8.49 | -- | 2.67 | -- | -- | -- | -0.449 | 18.5 | -- | -- | -- | -- |
| 507.89 | 1.05 | 8.41 | -- | -- | 1.02 | -- | -- | -0.383 | -- | 23.2 | 2 | -- | -- |
| 523.77 | 1.07 | 8.44 | -- | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 2 | 63.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 64.38 | temperature | 15 | 90 | > th | dose dependent | sin | 10 | NA |
| 9 | 64.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 10 | 64.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 14 | 64.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 64.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 21 | 64.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 23 | 65.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 33 | 65.22 | temperature | 15 | 720 | > th | dose dependent | sin | 15 | NA |
| 38 | 65.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 39 | 65.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 43 | 65.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 44 | 65.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 45 | 65.31 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 46 | 65.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 48 | 65.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 65 | 65.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 66 | 65.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 18 |
| 103 | 65.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 154 | 65.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 169 | 65.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 272 | 66.04 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 291 | 66.06 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 298 | 66.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 313 | 66.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 315 | 66.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 316 | 66.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 331 | 66.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 546 | 66.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 621 | 66.35 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 630 | 66.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 669 | 66.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 688 | 66.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 23 |