Os05g0369100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os05g0369100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.42 | 0.724 | 3.59 | -0.0468 | 0.16 | -1.58 | -0.643 | -0.793 | 0.422 | 14 | 25.08 | 740 | -- | -- |
| 238.31 | 0.719 | 3.6 | -0.109 | 0.136 | -1.46 | -0.766 | -- | 0.412 | 13.6 | 25.22 | 735 | -- | -- |
| 238.41 | 0.719 | 3.58 | -0.0145 | 0.202 | -1.58 | -- | -1.05 | 0.439 | 16.1 | 24.85 | 776 | -- | -- |
| 239.93 | 0.721 | 3.61 | -0.194 | 0.192 | -1.47 | -- | -- | 0.402 | 16.1 | 25 | 757 | -- | -- |
| 240.24 | 0.722 | 3.58 | -0.0267 | -- | -1.55 | -- | -0.956 | 0.433 | -- | 25 | 693 | -- | -- |
| 270.17 | 0.771 | 3.54 | 0.243 | 0.259 | -- | 0.779 | -- | 0.706 | 20.6 | -- | -- | -- | -- |
| 271.73 | 0.772 | 3.54 | 0.222 | 0.278 | -- | -- | -- | 0.709 | 19.4 | -- | -- | -- | -- |
| 241.45 | 0.724 | 3.61 | -0.188 | -- | -1.47 | -- | -- | 0.396 | -- | 25.1 | 674 | -- | -- |
| 240.78 | 0.723 | 3.6 | -- | 0.191 | -1.38 | -- | -- | 0.439 | 16.4 | 25 | 745 | -- | -- |
| 275.86 | 0.776 | 3.54 | 0.217 | -- | -- | -- | -- | 0.704 | -- | -- | -- | -- | -- |
| 273.03 | 0.773 | 3.55 | -- | 0.276 | -- | -- | -- | 0.684 | 19.5 | -- | -- | -- | -- |
| 242.3 | 0.725 | 3.6 | -- | -- | -1.39 | -- | -- | 0.432 | -- | 25.15 | 669 | -- | -- |
| 277.11 | 0.777 | 3.54 | -- | -- | -- | -- | -- | 0.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 233.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 9 | 235.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 14 | 236.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 25 | 236.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 33 | 236.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 35 | 236.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 43 | 236.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 46 | 236.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 71 | 237.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 74 | 237.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 94 | 237.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 98 | 237.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 105 | 237.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 106 | 237.45 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 124 | 237.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 129 | 237.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 141 | 237.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 144 | 237.73 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 148 | 237.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 155 | 237.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 168 | 237.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 253 | 238.47 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 274 | 238.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 302 | 238.77 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 326 | 238.92 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 354 | 239.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 446 | 239.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 656 | 240.40 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |