Os05g0368000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0368000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 762.79 | 1.3 | 9.88 | -2.87 | 1.33 | 1.23 | -1.37 | -23.9 | 0.602 | 14.3 | 28.65 | 826 | -- | -- |
| 839.04 | 1.35 | 9.56 | -0.634 | 1.39 | 0.672 | -0.969 | -- | 0.694 | 14 | 11.16 | 15976 | -- | -- |
| 769.53 | 1.29 | 9.87 | -2.84 | 1.34 | 1.24 | -- | -24.1 | 0.603 | 14.3 | 28.65 | 806 | -- | -- |
| 842.56 | 1.35 | 9.57 | -0.723 | 1.39 | 0.74 | -- | -- | 0.657 | 13.8 | 10.29 | 15984 | -- | -- |
| 870.46 | 1.37 | 9.92 | -3.09 | -- | 1.05 | -- | -22.6 | 0.532 | -- | 28.63 | 896 | -- | -- |
| 846.98 | 1.36 | 9.5 | -0.128 | 1.38 | -- | -1.05 | -- | 0.973 | 14 | -- | -- | -- | -- |
| 850.95 | 1.37 | 9.5 | -0.16 | 1.38 | -- | -- | -- | 0.966 | 13.8 | -- | -- | -- | -- |
| 932.03 | 1.43 | 9.56 | -0.497 | -- | 1.54 | -- | -- | 0.73 | -- | 10.29 | 15984 | -- | -- |
| 849.56 | 1.36 | 9.51 | -- | 1.39 | 0.293 | -- | -- | 0.88 | 13.8 | 11.41 | 15933 | -- | -- |
| 966.26 | 1.45 | 9.52 | -0.217 | -- | -- | -- | -- | 0.935 | -- | -- | -- | -- | -- |
| 851.63 | 1.37 | 9.5 | -- | 1.38 | -- | -- | -- | 0.984 | 13.8 | -- | -- | -- | -- |
| 898.58 | 1.4 | 9.58 | -- | -- | -1.32 | -- | -- | 0.721 | -- | 32 | 2425 | -- | -- |
| 967.5 | 1.45 | 9.51 | -- | -- | -- | -- | -- | 0.959 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 720.89 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 2 | 720.96 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 11 | 722.36 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 36 | 724.48 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 22 | NA |
| 137 | 727.96 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 198 | 729.25 | atmosphere | 1005 | 43200 | < th | dose dependent | no | NA | NA |
| 201 | 729.34 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 216 | 729.63 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 236 | 729.91 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 247 | 730.27 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 276 | 730.66 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 5 | NA |
| 303 | 731.26 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 317 | 731.52 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 343 | 731.95 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 386 | 732.82 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 404 | 733.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 451 | 733.96 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 477 | 734.64 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 497 | 735.05 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 515 | 735.35 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 530 | 735.74 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 533 | 735.74 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 550 | 735.95 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 559 | 736.05 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 563 | 736.10 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 576 | 736.25 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 634 | 737.24 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 642 | 737.37 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 750 | 739.59 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 799 | 740.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 858 | 742.02 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 15 | NA |
| 863 | 742.16 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 892 | 743.20 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 904 | 743.58 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 921 | 743.58 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |