Os05g0366600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxyisourate hydrolase.
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Os05g0366600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxyisourate hydrolase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.24 | 0.576 | 12.5 | 1.51 | 1.87 | -4.46 | -0.514 | 6.33 | -0.138 | 6.16 | 19.36 | 248 | 13 | 7.58 |
| 167.72 | 0.603 | 12.5 | 1.3 | 1.81 | -4.13 | -1.36 | -- | -0.138 | 6.03 | 17.61 | 231 | 13.2 | 7.62 |
| 150.15 | 0.571 | 12.5 | 1.54 | 1.82 | -4.49 | -- | 6.79 | -0.107 | 6.13 | 19.1 | 245 | 12.9 | 7.7 |
| 176.08 | 0.618 | 12.5 | 1.05 | 1.74 | -3.98 | -- | -- | -0.191 | 5.91 | 16.27 | 250 | 12.8 | 7.88 |
| 177.63 | 0.621 | 12.5 | 1.61 | -- | -5.69 | -- | 5.61 | -0.0968 | -- | 13.94 | 287 | 12.2 | 7.88 |
| 374.65 | 0.907 | 12.5 | 0.615 | 4.34 | -- | -1.24 | -- | -0.48 | 6.35 | -- | -- | -- | -- |
| 378.42 | 0.911 | 12.5 | 0.6 | 4.33 | -- | -- | -- | -0.476 | 6.36 | -- | -- | -- | -- |
| 175.69 | 0.617 | 12.6 | 1.06 | -- | -5.43 | -- | -- | -0.177 | -- | 9.97 | 362 | 11 | 8.7 |
| 200.44 | 0.659 | 12.5 | -- | 1.7 | -3.89 | -- | -- | -0.32 | 5.8 | 15.03 | 252 | 12.8 | 7.93 |
| 1353.26 | 1.72 | 12.6 | 0.714 | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
| 387.91 | 0.921 | 12.5 | -- | 4.34 | -- | -- | -- | -0.543 | 6.35 | -- | -- | -- | -- |
| 203.63 | 0.665 | 12.6 | -- | -- | -5.31 | -- | -- | -0.338 | -- | 5.69 | 359 | 11.1 | 8.52 |
| 1366.69 | 1.73 | 12.6 | -- | -- | -- | -- | -- | -0.463 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 3 | 155.71 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 6 |
| 25 | 168.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 37 | 171.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 74 | 182.27 | radiation | 1 | 270 | < th | dose dependent | sin | 15 | NA |
| 76 | 182.47 | radiation | 1 | 270 | > th | dose independent | sin | 15 | NA |
| 79 | 182.92 | radiation | 1 | 270 | < th | dose independent | sin | 15 | NA |
| 84 | 183.64 | radiation | 1 | 270 | > th | dose independent | rect. | 13 | 17 |
| 109 | 186.86 | radiation | 1 | 270 | > th | dose independent | rect. | 13 | 6 |
| 140 | 189.81 | temperature | 20 | 270 | > th | dose dependent | sin | 19 | NA |
| 200 | 194.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 7 |
| 217 | 196.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 220 | 196.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 224 | 197.03 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 17 |
| 236 | 197.84 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 17 |
| 317 | 203.07 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 349 | 204.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 394 | 206.37 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 6 |
| 424 | 208.77 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 454 | 209.94 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 5 |
| 462 | 210.30 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 16 |
| 507 | 212.18 | humidity | 80 | 270 | < th | dose independent | rect. | 14 | 3 |
| 589 | 214.69 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 601 | 215.05 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 618 | 215.51 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 21 |
| 688 | 217.23 | humidity | 90 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 730 | 218.46 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 21 |
| 733 | 218.56 | humidity | 90 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 744 | 218.90 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 748 | 219.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 916 | 224.23 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 934 | 224.90 | wind | 3 | 270 | > th | dose independent | rect. | 13 | 5 |
| 959 | 225.64 | radiation | 1 | 270 | > th | dose dependent | sin | 14 | NA |