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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0365600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxyisourate hydrolase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0275) R2 : 0.906
β1 : -1.08 (0.101) R2dD : 0.0244 R2D : 0.0253
β2 : 3.02 (0.108) R2dC : 0.365 R2C : 0.718
β3 : -2.72 (0.148) R2dE : 0.158 R2E : 0.52
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0294 (0.059) R2dN8 : 8.39e-05 R2N8 : -0.00235
σ : 0.514
deviance : 121.67
__
_____
C
peak time of C : 6.42
E
wheather : temperature
threshold : 12.63
memory length : 333
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.3
open length of G : 5.37

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.41 0.498 11.1 -1.09 3.02 -2.64 2.42 1.16 -0.0188 6.42 9.675 325 11.4 5.25
113.22 0.496 11.1 -1.13 3.08 -2.57 1.95 -- -0.0211 6.38 10.21 311 11.5 5.33
120.93 0.512 11.1 -1.17 3.15 -2.21 -- -0.971 -0.0855 6.28 8.745 280 11.6 6
121.67 0.514 11.1 -1.08 3.02 -2.72 -- -- -0.0294 6.42 12.63 333 11.3 5.37
145.93 0.563 11.1 -1.03 -- -5.01 -- 0.197 0.0548 -- -14.05 508 8.52 10.1
183.15 0.634 11.1 -1.3 4.52 -- 2.23 -- -0.148 6.01 -- -- -- --
195.34 0.655 11.1 -1.28 4.54 -- -- -- -0.157 5.99 -- -- -- --
142.52 0.556 11.1 -0.999 -- -5.29 -- -- -0.0378 -- -13.85 564 8.67 8.73
150.87 0.572 11.1 -- 3.04 -2.8 -- -- 0.0454 6.47 16.79 345 10.9 5.63
1261.36 1.66 11.1 -1.15 -- -- -- -- -0.0534 -- -- -- -- --
238.74 0.723 11 -- 4.52 -- -- -- -0.0138 6.01 -- -- -- --
167.27 0.602 11.1 -- -- -5.38 -- -- 0.0503 -- -6.16 563 8.68 8.78
1296.26 1.68 11.1 -- -- -- -- -- 0.0743 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.30 temperature 10.0 270 > th dose dependent rect. 12 5
3 115.00 temperature 10.0 270 > th dose dependent rect. 11 7
4 115.45 temperature 30.0 270 < th dose independent rect. 17 19
5 116.17 temperature 10.0 270 > th dose dependent rect. 1 16
13 118.45 temperature 10.0 270 > th dose dependent rect. 13 3
14 118.68 wind 1.0 270 > th dose independent rect. 12 5
18 119.07 precipitation 0.1 270 < th dose independent rect. 17 19
19 119.07 precipitation 0.1 270 < th dose dependent rect. 17 19
21 119.60 wind 9.0 270 < th dose independent rect. 12 5
23 119.96 atmosphere 1010.0 270 < th dose independent rect. 12 5
26 120.23 precipitation 0.1 270 < th dose independent rect. 12 5
27 120.23 precipitation 0.1 270 < th dose dependent rect. 12 5
28 120.27 temperature 10.0 270 > th dose independent rect. 12 5
31 120.27 temperature 10.0 270 > th dose independent rect. 17 19
35 120.58 humidity 50.0 270 > th dose independent rect. 17 19
41 121.26 humidity 50.0 270 > th dose dependent rect. 22 10
42 121.30 humidity 90.0 270 < th dose independent rect. 12 5
44 121.33 wind 9.0 270 < th dose independent rect. 17 19
47 121.86 atmosphere 995.0 270 > th dose independent rect. 17 19
52 122.36 atmosphere 995.0 270 > th dose independent rect. 12 5
63 122.81 atmosphere 1010.0 270 < th dose independent rect. 11 7
67 122.94 humidity 50.0 270 > th dose independent rect. 16 21
96 124.09 radiation 1.0 270 > th dose independent rect. 12 5
101 124.37 wind 1.0 270 > th dose independent rect. 17 19
113 124.85 atmosphere 1015.0 270 < th dose dependent rect. 12 5
201 127.73 temperature 30.0 270 < th dose independent rect. 7 15
206 127.81 atmosphere 1015.0 270 < th dose independent rect. 17 19
208 127.83 radiation 40.0 270 < th dose independent rect. 17 20
223 128.23 radiation 40.0 270 < th dose independent rect. 18 18
278 129.30 radiation 20.0 270 < th dose independent rect. 22 9
280 129.37 humidity 70.0 270 > th dose independent rect. 22 9
292 129.51 temperature 10.0 270 > th dose independent rect. 22 9
293 129.51 temperature 30.0 270 < th dose independent rect. 22 9
294 129.51 humidity 50.0 270 > th dose independent rect. 22 9
296 129.51 atmosphere 995.0 270 > th dose independent rect. 22 9
298 129.51 temperature 10.0 270 > th dose independent rect. 7 15
301 129.57 wind 9.0 270 < th dose independent rect. 22 9
315 130.27 precipitation 0.1 270 < th dose independent rect. 7 15
316 130.27 precipitation 0.1 270 < th dose dependent rect. 7 15
348 130.78 radiation 40.0 90 < th dose independent rect. 13 6
363 131.05 humidity 60.0 270 > th dose independent rect. 17 6
376 131.23 radiation 40.0 270 < th dose dependent rect. 22 9
382 131.39 atmosphere 1015.0 270 < th dose independent rect. 7 15
400 131.74 precipitation 0.1 270 < th dose independent rect. 22 9
402 131.74 precipitation 0.1 270 < th dose dependent rect. 22 9
416 131.84 humidity 90.0 270 < th dose dependent rect. 12 5
440 132.18 humidity 50.0 270 > th dose independent rect. 16 9
452 132.24 temperature 15.0 270 > th dose independent rect. 1 16
473 132.37 temperature 30.0 270 < th dose independent rect. 17 6
476 132.40 temperature 10.0 1440 > th dose independent rect. 15 5
479 132.40 temperature 10.0 1440 > th dose independent rect. 20 19
482 132.47 wind 9.0 270 < th dose independent rect. 7 15
491 132.70 temperature 15.0 270 > th dose independent rect. 17 6
495 132.75 radiation 10.0 270 < th dose independent rect. 16 9
502 132.89 wind 9.0 270 < th dose independent rect. 23 18
503 132.90 wind 1.0 270 > th dose independent rect. 17 8
505 132.91 wind 9.0 270 < th dose independent rect. 1 16
507 132.94 radiation 20.0 270 < th dose dependent rect. 16 9
510 133.03 radiation 10.0 270 < th dose independent rect. 17 6
511 133.04 radiation 10.0 270 < th dose dependent rect. 17 6
540 133.22 humidity 50.0 270 > th dose independent rect. 7 15
550 133.34 temperature 15.0 270 > th dose independent rect. 17 8
551 133.34 radiation 10.0 270 < th dose dependent sin 17 NA
557 133.41 radiation 40.0 270 < th dose dependent sin 15 NA
563 133.49 wind 9.0 270 < th dose dependent rect. 12 5
579 133.59 radiation 40.0 270 < th dose independent rect. 8 15
592 133.75 wind 1.0 90 > th dose dependent rect. 14 5
603 133.85 radiation 1.0 270 > th dose dependent rect. 13 5
605 133.87 radiation 1.0 270 > th dose dependent sin 15 NA
632 134.01 humidity 90.0 270 < th dose dependent rect. 13 3
682 134.21 atmosphere 1015.0 270 < th dose independent rect. 1 16
704 134.29 precipitation 0.1 270 < th dose independent rect. 17 6
705 134.29 precipitation 0.1 270 < th dose dependent rect. 17 6
706 134.30 wind 9.0 270 < th dose independent rect. 17 6
721 134.37 wind 9.0 270 < th dose independent rect. 17 8
739 134.46 temperature 30.0 270 < th dose independent rect. 6 6
742 134.47 wind 1.0 270 > th dose dependent rect. 13 3
785 134.72 radiation 40.0 270 < th dose dependent rect. 8 15
786 134.74 humidity 50.0 270 > th dose independent rect. 13 3
789 134.76 humidity 50.0 270 > th dose independent rect. 14 1
817 134.92 precipitation 0.1 270 < th dose independent rect. 17 8
818 134.92 precipitation 0.1 270 < th dose dependent rect. 17 8
851 135.16 temperature 10.0 1440 > th dose independent rect. 13 7
854 135.16 temperature 10.0 1440 > th dose independent rect. 20 17
857 135.16 atmosphere 995.0 1440 > th dose independent rect. 20 17
877 135.29 temperature 30.0 270 < th dose dependent rect. 7 15
920 135.54 radiation 1.0 270 > th dose independent rect. 4 8
941 135.61 wind 9.0 270 < th dose independent rect. 12 18
956 135.75 humidity 70.0 270 < th dose independent rect. 13 4
981 135.83 precipitation 0.1 270 < th dose independent rect. 1 16
984 135.83 precipitation 0.1 270 < th dose dependent rect. 1 16
990 135.88 atmosphere 995.0 270 > th dose independent rect. 17 6
991 135.91 temperature 10.0 270 > th dose dependent rect. 12 18
992 135.92 temperature 10.0 270 > th dose independent rect. 6 6
993 135.92 atmosphere 995.0 270 > th dose independent rect. 6 6
994 135.92 atmosphere 1015.0 270 < th dose independent rect. 6 6
995 135.92 temperature 10.0 270 > th dose independent rect. 12 18
996 135.92 precipitation 0.1 270 < th dose independent rect. 23 18
998 135.92 precipitation 0.1 270 < th dose dependent rect. 23 18