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Os05g0365500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.79 (0.0299) R2 : 0.714
β1 : 1.82 (0.109) R2dD : 0.18 R2D : 0.16
β2 : 1.78 (0.0797) R2dC : 0.326 R2C : 0.401
β3 : -1.29 (0.0884) R2dE : 0.14 R2E : 0.224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.064) R2dN8 : 0.00228 R2N8 : -0.00557
σ : 0.559
deviance : 144.06
__
_____
C
peak time of C : 17.6
E
wheather : radiation
threshold : 46.66
memory length : 73
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.46 0.561 8.8 1.82 1.76 -1.32 0.753 -0.225 0.0996 17.6 47.65 77 -- --
142.57 0.556 8.8 1.82 1.77 -1.29 0.776 -- 0.1 17.6 46.7 74 -- --
143.84 0.559 8.79 1.81 1.77 -1.32 -- -0.304 0.103 17.6 47.69 77 -- --
144.06 0.559 8.79 1.82 1.78 -1.29 -- -- 0.106 17.6 46.66 73 -- --
182.85 0.63 8.78 1.82 -- -2.05 -- 0.286 0.108 -- 4.124 492 -- --
167.1 0.606 8.77 1.84 2.16 -- 0.704 -- 0.173 16.1 -- -- -- --
168.5 0.608 8.77 1.85 2.16 -- -- -- 0.177 16.1 -- -- -- --
180.6 0.626 8.78 1.77 -- -2.13 -- -- 0.0577 -- 4.19 511 -- --
229.56 0.706 8.84 -- 1.65 -1.31 -- -- -0.115 18 34.26 100 -- --
422.25 0.96 8.75 1.76 -- -- -- -- 0.12 -- -- -- -- --
258.45 0.752 8.81 -- 2.13 -- -- -- -0.0284 16.1 -- -- -- --
254.26 0.743 8.8 -- -- -2.14 -- -- -0.0834 -- 0.006841 532 -- --
503.95 1.05 8.8 -- -- -- -- -- -0.0755 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.47 wind 5.0 270 < th dose independent rect. 3 2
2 130.50 radiation 20.0 270 < th dose dependent rect. 1 10
5 130.74 wind 5.0 90 < th dose independent rect. 3 5
7 130.85 radiation 20.0 270 < th dose dependent rect. 1 12
10 130.95 radiation 20.0 90 < th dose independent rect. 3 8
11 131.24 wind 5.0 270 < th dose independent rect. 1 6
12 131.33 radiation 40.0 90 < th dose dependent rect. 3 8
13 131.34 radiation 20.0 90 < th dose independent rect. 3 6
21 131.86 radiation 40.0 90 < th dose independent rect. 3 19
22 131.91 radiation 20.0 30 < th dose independent rect. 4 18
24 131.96 radiation 40.0 10 < th dose dependent rect. 4 18
25 131.99 precipitation 0.1 90 < th dose independent rect. 3 5
26 131.99 radiation 10.0 270 < th dose independent rect. 1 7
27 131.99 precipitation 0.1 90 < th dose dependent rect. 3 5
30 132.30 precipitation 0.1 90 < th dose independent rect. 8 19
31 132.30 precipitation 0.1 90 < th dose dependent rect. 8 19
36 132.41 radiation 40.0 90 < th dose dependent rect. 3 19
42 132.49 wind 9.0 90 < th dose independent rect. 8 19
44 132.52 precipitation 0.1 270 < th dose independent rect. 3 2
45 132.52 precipitation 0.1 270 < th dose dependent rect. 3 2
50 132.71 temperature 10.0 90 > th dose independent rect. 3 5
52 132.71 temperature 30.0 90 < th dose independent rect. 3 5
53 132.71 humidity 50.0 90 > th dose independent rect. 3 5
55 132.71 atmosphere 995.0 90 > th dose independent rect. 3 5
56 132.71 atmosphere 1015.0 90 < th dose independent rect. 3 5
58 132.71 temperature 10.0 90 > th dose independent rect. 8 19
82 133.31 wind 9.0 90 < th dose dependent rect. 3 5
83 133.34 wind 9.0 270 < th dose independent rect. 5 22
85 133.35 temperature 10.0 270 > th dose independent rect. 3 2
87 133.35 temperature 30.0 270 < th dose independent rect. 3 2
88 133.35 humidity 50.0 270 > th dose independent rect. 3 2
91 133.35 atmosphere 995.0 270 > th dose independent rect. 3 2
92 133.35 atmosphere 1010.0 270 < th dose independent rect. 3 2
94 133.35 radiation 20.0 270 < th dose independent rect. 3 2
97 133.35 temperature 10.0 270 > th dose independent rect. 5 22
98 133.38 radiation 40.0 270 < th dose dependent rect. 3 2
106 133.50 radiation 1.0 270 < th dose independent rect. 3 2
120 133.76 radiation 40.0 90 < th dose dependent rect. 3 16
139 134.08 wind 9.0 270 < th dose dependent rect. 3 2
146 134.30 radiation 40.0 90 < th dose dependent rect. 3 12
152 134.46 radiation 10.0 270 < th dose independent rect. 1 12
153 134.47 precipitation 0.1 270 < th dose independent rect. 1 6
154 134.47 precipitation 0.1 270 < th dose dependent rect. 1 6
166 134.62 atmosphere 995.0 90 > th dose dependent rect. 3 5
178 134.76 radiation 20.0 90 < th dose independent rect. 3 16
180 134.76 radiation 40.0 270 < th dose dependent rect. 1 16
181 134.78 radiation 40.0 90 < th dose independent rect. 3 16
189 134.87 radiation 20.0 270 < th dose dependent rect. 1 18
206 134.95 radiation 40.0 270 < th dose dependent rect. 1 18
212 134.99 wind 5.0 10 < th dose independent rect. 4 5
213 135.00 humidity 70.0 270 > th dose independent rect. 1 6
214 135.00 precipitation 0.1 270 < th dose independent rect. 5 22
216 135.00 precipitation 0.1 270 < th dose dependent rect. 5 22
232 135.12 temperature 10.0 270 > th dose independent rect. 1 6
234 135.12 temperature 30.0 270 < th dose independent rect. 1 6
235 135.12 humidity 50.0 270 > th dose independent rect. 1 6
237 135.12 atmosphere 995.0 270 > th dose independent rect. 1 6
238 135.12 atmosphere 1015.0 270 < th dose independent rect. 1 6
262 135.30 wind 9.0 270 < th dose independent rect. 6 20
266 135.33 temperature 10.0 90 > th dose dependent rect. 3 5
275 135.47 wind 9.0 10 < th dose dependent rect. 4 5
289 135.48 temperature 10.0 270 > th dose independent rect. 6 20
292 135.50 radiation 10.0 270 < th dose independent rect. 1 18
293 135.50 wind 9.0 10 < th dose independent rect. 9 19
296 135.57 precipitation 0.1 10 < th dose independent rect. 4 5
297 135.57 precipitation 0.1 10 < th dose dependent rect. 4 5
300 135.59 wind 9.0 270 < th dose dependent rect. 1 6
308 135.64 wind 1.0 270 > th dose independent rect. 3 2
326 135.69 temperature 10.0 10 > th dose independent rect. 4 5
328 135.69 temperature 30.0 10 < th dose independent rect. 4 5
329 135.69 humidity 50.0 10 > th dose independent rect. 4 5
331 135.69 atmosphere 995.0 10 > th dose independent rect. 4 5
332 135.69 atmosphere 1015.0 10 < th dose independent rect. 4 5
333 135.69 temperature 10.0 10 > th dose independent rect. 9 19
341 135.73 radiation 10.0 90 > th dose independent rect. 8 7
345 135.77 atmosphere 1005.0 90 > th dose independent rect. 3 5
347 135.81 atmosphere 995.0 90 > th dose independent rect. 8 19
348 135.81 precipitation 0.1 270 < th dose independent rect. 6 20
350 135.81 precipitation 0.1 270 < th dose dependent rect. 6 20
351 135.84 radiation 20.0 270 < th dose dependent sin 6 NA
356 135.86 radiation 40.0 10 < th dose dependent rect. 4 16
372 135.96 wind 1.0 270 > th dose independent rect. 1 6
380 136.00 radiation 40.0 10 < th dose independent rect. 4 5
401 136.06 humidity 50.0 270 > th dose dependent rect. 3 2
404 136.07 radiation 40.0 10 < th dose dependent rect. 4 6
457 136.25 atmosphere 995.0 270 > th dose dependent rect. 3 2
476 136.29 humidity 70.0 90 > th dose independent rect. 3 8
481 136.32 wind 1.0 270 > th dose independent rect. 2 4
493 136.38 temperature 10.0 270 > th dose dependent rect. 3 2
519 136.56 atmosphere 1005.0 270 > th dose independent rect. 3 2
522 136.57 radiation 40.0 270 < th dose independent rect. 1 18
534 136.61 radiation 40.0 90 < th dose dependent rect. 13 20
580 136.84 atmosphere 1015.0 270 < th dose independent rect. 11 10
587 136.86 radiation 30.0 90 < th dose dependent sin 2 NA
611 137.02 atmosphere 995.0 10 > th dose dependent rect. 4 4
619 137.04 temperature 15.0 270 > th dose independent rect. 6 9
628 137.11 humidity 50.0 270 > th dose dependent rect. 19 7
639 137.19 humidity 50.0 90 > th dose dependent rect. 3 6
640 137.20 radiation 40.0 270 < th dose independent rect. 13 17
647 137.23 radiation 40.0 270 < th dose independent rect. 11 20
655 137.26 temperature 10.0 270 > th dose independent rect. 19 7
656 137.26 temperature 30.0 270 < th dose independent rect. 19 7
657 137.26 humidity 50.0 270 > th dose independent rect. 19 7
658 137.26 atmosphere 995.0 270 > th dose independent rect. 19 7
659 137.26 radiation 1.0 270 < th dose independent rect. 19 7
664 137.26 temperature 10.0 270 > th dose independent rect. 2 17
665 137.26 atmosphere 1015.0 270 < th dose independent rect. 2 17
667 137.26 radiation 1.0 270 < th dose dependent rect. 19 7
675 137.28 wind 9.0 270 < th dose independent rect. 19 7
694 137.37 precipitation 0.1 270 < th dose independent rect. 2 17
696 137.37 precipitation 0.1 270 < th dose dependent rect. 2 17
701 137.39 precipitation 0.1 270 < th dose independent rect. 6 9
703 137.39 precipitation 0.1 270 < th dose dependent rect. 6 9
716 137.44 wind 9.0 270 < th dose independent rect. 6 9
720 137.44 radiation 40.0 90 < th dose dependent rect. 13 22
723 137.47 atmosphere 1015.0 270 < th dose independent rect. 14 16
767 137.65 radiation 20.0 90 < th dose independent rect. 13 20
772 137.66 temperature 10.0 270 > th dose dependent rect. 1 6
813 137.80 precipitation 0.1 270 < th dose independent rect. 19 7
815 137.80 precipitation 0.1 270 < th dose dependent rect. 19 7
819 137.84 temperature 30.0 10 < th dose dependent rect. 22 6
826 137.87 atmosphere 1015.0 270 < th dose independent rect. 6 9
827 137.87 temperature 10.0 270 > th dose independent rect. 15 15
836 137.91 wind 9.0 270 < th dose independent rect. 2 17
844 137.95 radiation 40.0 90 < th dose dependent rect. 15 18
856 138.00 wind 9.0 270 < th dose independent rect. 15 15
885 138.10 atmosphere 995.0 10 > th dose independent rect. 9 19
910 138.22 precipitation 0.1 270 < th dose independent rect. 15 15
912 138.22 precipitation 0.1 270 < th dose dependent rect. 15 15
918 138.25 atmosphere 995.0 270 > th dose independent rect. 6 8
962 138.36 atmosphere 995.0 270 > th dose independent rect. 6 20
998 138.39 temperature 30.0 270 < th dose dependent rect. 21 4
1000 138.40 radiation 20.0 90 < th dose independent rect. 15 18