Os05g0365300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR protein (Fragment).
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Os05g0365300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.37 | 0.447 | 9.85 | 0.55 | 1.28 | -1.72 | -0.299 | -1.97 | 0.548 | 23.8 | 21.08 | 5966 | -- | -- |
| 92.9 | 0.449 | 9.94 | 0.435 | 1.26 | -1.25 | -0.336 | -- | 0.443 | 23.8 | 22 | 4831 | -- | -- |
| 90.74 | 0.444 | 9.85 | 0.561 | 1.28 | -1.71 | -- | -1.97 | 0.549 | 23.8 | 21.1 | 5975 | -- | -- |
| 93.19 | 0.45 | 9.94 | 0.425 | 1.26 | -1.25 | -- | -- | 0.451 | 23.8 | 22 | 4826 | -- | -- |
| 186.99 | 0.637 | 9.84 | 0.74 | -- | -1.6 | -- | -1.69 | 0.564 | -- | 21.7 | 5243 | -- | -- |
| 135.84 | 0.546 | 9.83 | 1.14 | 1.3 | -- | -0.25 | -- | 0.927 | 23.8 | -- | -- | -- | -- |
| 136.11 | 0.546 | 9.83 | 1.15 | 1.3 | -- | -- | -- | 0.928 | 23.8 | -- | -- | -- | -- |
| 147.17 | 0.565 | 9.93 | 0.679 | -- | -1.51 | -- | -- | 0.356 | -- | 24.8 | 910 | -- | -- |
| 95.22 | 0.454 | 9.95 | -- | 1.22 | -1.46 | -- | -- | 0.393 | 23.8 | 21.8 | 6118 | -- | -- |
| 242.6 | 0.728 | 9.8 | 1.19 | -- | -- | -- | -- | 0.944 | -- | -- | -- | -- | -- |
| 171.15 | 0.612 | 9.86 | -- | 1.32 | -- | -- | -- | 0.799 | 23.9 | -- | -- | -- | -- |
| 158.49 | 0.586 | 9.96 | -- | -- | -1.68 | -- | -- | 0.244 | -- | 24.8 | 921 | -- | -- |
| 280.06 | 0.781 | 9.83 | -- | -- | -- | -- | -- | 0.812 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.34 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 3 | 88.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 8 | 89.78 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 13 | 90.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 17 | 90.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 37 | 91.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 47 | 91.18 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 48 | 91.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 86 | 91.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 149 | 91.66 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 154 | 91.68 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 163 | 91.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 164 | 91.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 196 | 91.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 198 | 91.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 202 | 91.88 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 244 | 92.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 288 | 92.24 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 412 | 92.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 471 | 93.01 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 481 | 93.06 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 517 | 93.16 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 522 | 93.17 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 577 | 93.22 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 4 | 15 |
| 581 | 93.23 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 2 | NA |
| 642 | 93.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 721 | 93.32 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 741 | 93.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 742 | 93.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 4 |
| 755 | 93.33 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 20 |
| 772 | 93.34 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 784 | 93.34 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 18 |
| 795 | 93.34 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 822 | 93.35 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 23 |