Os05g0364300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0364300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.58 | 0.547 | 9.86 | 0.0887 | 0.827 | 0.69 | 0.824 | -1.3 | 0.436 | 21.1 | 17.09 | 1334 | -- | -- |
| 139.47 | 0.55 | 9.86 | 0.00438 | 0.819 | 0.721 | 1.04 | -- | 0.429 | 21.2 | 16.44 | 1337 | -- | -- |
| 137.24 | 0.546 | 9.86 | 0.0746 | 0.853 | 0.697 | -- | -1.6 | 0.444 | 21 | 16.87 | 1281 | -- | -- |
| 143.2 | 0.557 | 9.87 | -0.0101 | 0.849 | 0.723 | -- | -- | 0.411 | 21 | 16.45 | 1339 | -- | -- |
| 173.08 | 0.613 | 9.83 | 0.109 | -- | 0.597 | -- | -1.31 | 0.471 | -- | 16.87 | 1429 | -- | -- |
| 154.5 | 0.583 | 9.91 | -0.159 | 0.737 | -- | 0.928 | -- | 0.215 | 20.7 | -- | -- | -- | -- |
| 157.3 | 0.587 | 9.91 | -0.188 | 0.738 | -- | -- | -- | 0.215 | 20.6 | -- | -- | -- | -- |
| 176.93 | 0.62 | 9.84 | -0.0255 | -- | 0.604 | -- | -- | 0.412 | -- | 10.67 | 1475 | -- | -- |
| 142.82 | 0.557 | 9.87 | -- | 0.861 | 0.727 | -- | -- | 0.396 | 21.1 | 19.46 | 1306 | -- | -- |
| 187.88 | 0.64 | 9.89 | -0.191 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 158.24 | 0.588 | 9.91 | -- | 0.738 | -- | -- | -- | 0.236 | 20.6 | -- | -- | -- | -- |
| 176.87 | 0.619 | 9.85 | -- | -- | 0.639 | -- | -- | 0.411 | -- | 10.49 | 1481 | -- | -- |
| 188.84 | 0.641 | 9.89 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 131.39 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 6 | 131.60 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 9 | 132.07 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 12 | 132.52 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 13 | 132.54 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 14 | 132.54 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 15 | 132.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 16 | 132.63 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 23 | 132.84 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 39 | 133.20 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 55 | 133.55 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 60 | 133.57 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 66 | 133.59 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 68 | 133.60 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 76 | 133.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 106 | 133.88 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 137 | 134.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 149 | 134.28 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 221 | 134.83 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 281 | 135.06 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 285 | 135.11 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 288 | 135.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 323 | 135.30 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 346 | 135.39 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 350 | 135.42 | radiation | 10 | 1440 | < th | dose independent | sin | 18 | NA |
| 351 | 135.43 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 11 |
| 357 | 135.45 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 367 | 135.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 369 | 135.52 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 370 | 135.52 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 376 | 135.54 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 398 | 135.63 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 430 | 135.74 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 19 |
| 448 | 135.84 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 498 | 135.96 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 19 |
| 503 | 135.99 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 506 | 136.02 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 512 | 136.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 587 | 136.51 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 15 | 18 |
| 632 | 136.63 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 20 |
| 659 | 136.73 | humidity | 50 | 270 | > th | dose independent | rect. | 8 | 18 |
| 683 | 136.81 | radiation | 20 | 1440 | < th | dose dependent | sin | 21 | NA |
| 701 | 136.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 706 | 136.86 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 22 |
| 708 | 136.86 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 722 | 136.91 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 19 |
| 725 | 136.92 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 730 | 136.95 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 735 | 136.96 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 740 | 136.98 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 17 | 16 |
| 747 | 137.01 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 758 | 137.04 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 17 |
| 825 | 137.22 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 19 |
| 828 | 137.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 834 | 137.23 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 900 | 137.35 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 15 |
| 957 | 137.49 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |