Os05g0361500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0361500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectinmethylesterase precursor (EC 3.1.1.11) (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.03	(0.0612)	R²	:	0.483
β₁	:	-0.493	(0.224)	R²_dD	:	0.00559	R²_D	:	-0.0352
β₂	:	2.34	(0.151)	R²_dC	:	0.297	R²_C	:	0.336
β₃	:	1.45	(0.299)	R²_dE	:	0.0303	R²_E	:	0.0401
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	6.79	(1.07)	R²_dD*E	:	0.0475	R²_D*E	:	0.0176
γ₁	:	-0.955	(0.13)	R²_dN8	:	0.0822	R²_N8	:	0.047
σ	:	1.14
deviance	:	598.63
__

_____

C
peak time of C	:	23.8
E
wheather	:	radiation
threshold	:	0.4387
memory length	:	184
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	sin
peak or start time of G	:	18.8
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
598.84	1.15	5.02	-0.471	2.35	1.4	0.245	6.42	-0.951	23.8	0.4846	185	18.9	--
627.59	1.17	5.01	-0.546	2.42	1.58	0.91	--	-0.896	23.7	2.4	56	19.9	--
598.63	1.14	5.03	-0.493	2.34	1.45	--	6.79	-0.955	23.8	0.4387	184	18.8	--
630.78	1.17	4.98	-0.554	2.4	1.5	--	--	-0.858	23.8	2.4	56	19.8	--
852.99	1.36	5.01	-0.689	--	3.99	--	8.9	-1.03	--	0.3	283	17.9	--
659.01	1.2	4.99	-0.479	2.63	--	0.991	--	-0.931	0.352	--	--	--	--
663.25	1.21	4.99	-0.518	2.62	--	--	--	-0.936	0.353	--	--	--	--
645.11	1.18	4.93	-0.582	--	2.43	--	--	-0.859	--	7.91	23	5.41	--
638.65	1.18	4.97	--	2.41	1.5	--	--	-0.809	23.8	2.39	56	19.7	--
1095.67	1.55	4.94	-0.43	--	--	--	--	-0.894	--	--	--	--	--
670.32	1.21	4.98	--	2.62	--	--	--	-0.878	0.343	--	--	--	--
653.89	1.19	4.91	--	--	2.47	--	--	-0.797	--	7.98	23	5.44	--
1100.54	1.55	4.93	--	--	--	--	--	-0.846	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	599.04	precipitation	0.1	90	< th	dose independent	rect.	5	23
2	599.04	precipitation	0.1	90	< th	dose dependent	rect.	5	23
3	600.23	atmosphere	1005.0	90	> th	dose dependent	rect.	4	1
4	600.72	wind	1.0	90	> th	dose independent	rect.	4	1
5	601.37	radiation	1.0	90	< th	dose dependent	rect.	4	15
8	603.56	radiation	1.0	90	< th	dose dependent	rect.	4	13
10	604.44	temperature	30.0	90	< th	dose dependent	rect.	4	1
17	605.70	radiation	10.0	30	< th	dose dependent	rect.	4	4
28	607.15	radiation	20.0	30	< th	dose independent	rect.	4	19
29	607.55	radiation	1.0	270	< th	dose dependent	sin	1	NA
30	607.63	radiation	1.0	90	< th	dose independent	rect.	4	15
31	607.68	radiation	1.0	90	< th	dose independent	rect.	4	12
32	607.76	radiation	1.0	270	> th	dose independent	rect.	18	21
35	608.12	wind	9.0	90	< th	dose independent	rect.	5	23
36	608.16	humidity	70.0	10	> th	dose dependent	rect.	4	19
37	608.20	atmosphere	995.0	4320	> th	dose independent	rect.	5	2
39	608.38	radiation	1.0	270	> th	dose independent	rect.	5	10
54	608.79	atmosphere	1000.0	90	> th	dose independent	rect.	4	1
57	608.96	radiation	1.0	90	< th	dose independent	rect.	4	3
58	608.98	radiation	20.0	30	< th	dose independent	rect.	4	16
59	608.98	radiation	10.0	90	< th	dose dependent	rect.	3	20
70	609.45	humidity	70.0	1440	> th	dose independent	rect.	4	3
72	609.48	radiation	30.0	30	< th	dose dependent	rect.	4	19
74	609.54	wind	5.0	90	< th	dose independent	rect.	15	16
84	609.77	wind	9.0	14400	< th	dose independent	rect.	22	5
90	609.88	radiation	1.0	90	< th	dose independent	rect.	4	7
98	609.93	wind	9.0	90	< th	dose independent	rect.	4	1
99	609.93	temperature	10.0	90	> th	dose independent	rect.	4	1
101	609.93	temperature	30.0	90	< th	dose independent	rect.	4	1
102	609.93	humidity	50.0	90	> th	dose independent	rect.	4	1
106	609.93	atmosphere	1010.0	90	< th	dose independent	rect.	4	1
108	609.93	radiation	20.0	90	< th	dose independent	rect.	4	1
111	609.93	temperature	10.0	90	> th	dose independent	rect.	5	23
112	609.95	radiation	40.0	90	< th	dose dependent	rect.	4	1
119	610.04	radiation	1.0	270	< th	dose independent	sin	1	NA
123	610.10	temperature	30.0	10	< th	dose dependent	rect.	4	2
124	610.11	radiation	1.0	90	< th	dose independent	rect.	4	1
128	610.24	precipitation	0.1	90	< th	dose independent	rect.	4	1
129	610.24	precipitation	0.1	90	< th	dose dependent	rect.	4	1
131	610.27	radiation	1.0	270	> th	dose independent	sin	3	NA
143	610.73	radiation	30.0	30	< th	dose dependent	rect.	4	16
152	610.90	radiation	1.0	90	< th	dose independent	rect.	3	20
166	611.26	humidity	70.0	720	> th	dose dependent	rect.	5	2
170	611.41	atmosphere	1000.0	90	> th	dose independent	rect.	17	13
180	611.60	wind	1.0	14400	< th	dose dependent	rect.	1	6
182	611.63	humidity	90.0	90	> th	dose independent	rect.	3	19
189	611.72	wind	1.0	14400	< th	dose dependent	rect.	23	8
190	611.73	humidity	80.0	10	> th	dose independent	rect.	4	19
192	611.76	temperature	25.0	30	< th	dose independent	rect.	4	16
203	612.01	wind	1.0	10	> th	dose dependent	rect.	4	2
223	612.47	humidity	80.0	30	> th	dose dependent	rect.	2	21
226	612.50	radiation	30.0	1440	< th	dose independent	rect.	5	2
244	612.90	temperature	25.0	30	< th	dose independent	rect.	4	3
250	612.99	radiation	1.0	90	> th	dose independent	sin	1	NA
285	613.31	wind	1.0	90	> th	dose dependent	rect.	4	1
316	613.84	wind	1.0	14400	< th	dose dependent	rect.	20	11
359	614.24	radiation	20.0	30	< th	dose independent	rect.	4	12
364	614.30	wind	1.0	14400	< th	dose dependent	rect.	1	2
378	614.46	humidity	50.0	90	> th	dose dependent	rect.	4	1
390	614.66	precipitation	0.1	10	< th	dose independent	rect.	20	8
391	614.66	precipitation	0.1	10	< th	dose dependent	rect.	20	8
396	614.71	radiation	40.0	1440	< th	dose independent	rect.	16	15
451	615.33	precipitation	0.1	270	< th	dose independent	rect.	3	23
452	615.33	precipitation	0.1	270	< th	dose dependent	rect.	3	23
473	615.70	temperature	10.0	90	> th	dose dependent	rect.	4	1
481	615.78	atmosphere	1000.0	270	> th	dose independent	rect.	15	15
483	615.80	wind	1.0	14400	< th	dose independent	rect.	20	11
484	615.81	wind	9.0	90	< th	dose dependent	rect.	4	1
490	615.89	humidity	80.0	90	> th	dose dependent	rect.	3	2
508	616.00	radiation	20.0	30	< th	dose independent	rect.	4	4
521	616.14	atmosphere	995.0	43200	> th	dose independent	rect.	6	1
522	616.16	precipitation	0.1	720	< th	dose independent	rect.	19	22
523	616.16	precipitation	0.1	720	< th	dose dependent	rect.	19	22
547	616.47	wind	5.0	90	< th	dose independent	rect.	17	14
561	616.55	atmosphere	1000.0	90	> th	dose independent	rect.	3	20
578	616.78	atmosphere	1015.0	30	< th	dose independent	rect.	6	22
585	616.88	wind	1.0	14400	< th	dose independent	rect.	1	2
587	616.89	humidity	90.0	90	< th	dose independent	rect.	6	11
597	616.94	temperature	25.0	30	< th	dose independent	rect.	3	9
598	616.95	precipitation	0.1	10	< th	dose independent	rect.	23	5
600	616.95	precipitation	0.1	10	< th	dose dependent	rect.	23	5
649	617.39	wind	1.0	14400	< th	dose independent	rect.	23	8
655	617.42	wind	1.0	14400	< th	dose independent	rect.	2	7
665	617.51	temperature	25.0	30	< th	dose independent	rect.	3	13
684	617.73	wind	7.0	720	< th	dose independent	rect.	19	7
726	618.04	humidity	90.0	30	> th	dose independent	rect.	3	7
728	618.04	wind	1.0	14400	> th	dose independent	rect.	20	11
744	618.15	wind	1.0	14400	> th	dose independent	rect.	1	2
767	618.24	atmosphere	1000.0	10	> th	dose independent	rect.	4	19
771	618.27	wind	1.0	14400	< th	dose dependent	rect.	5	2
783	618.35	humidity	90.0	30	> th	dose independent	rect.	3	4
792	618.39	radiation	1.0	30	> th	dose independent	rect.	6	12
799	618.43	wind	1.0	14400	< th	dose dependent	sin	9	NA
822	618.60	humidity	90.0	30	< th	dose independent	rect.	1	16
825	618.62	radiation	40.0	10	< th	dose independent	rect.	4	19
826	618.63	radiation	10.0	30	< th	dose dependent	rect.	14	19
831	618.64	radiation	30.0	90	< th	dose dependent	rect.	13	21
863	618.85	radiation	10.0	30	< th	dose dependent	rect.	2	23
867	618.88	radiation	20.0	90	< th	dose independent	rect.	13	21
915	619.17	radiation	30.0	30	< th	dose dependent	rect.	14	16
916	619.18	atmosphere	995.0	30	> th	dose independent	rect.	6	22
922	619.19	atmosphere	995.0	30	> th	dose dependent	rect.	2	21
925	619.22	wind	7.0	270	< th	dose independent	rect.	1	20
944	619.34	wind	1.0	14400	> th	dose independent	rect.	1	8
949	619.36	wind	7.0	90	< th	dose independent	rect.	23	4
963	619.45	atmosphere	995.0	720	> th	dose independent	rect.	17	12
966	619.45	atmosphere	995.0	10	> th	dose dependent	rect.	4	19
971	619.49	atmosphere	1015.0	270	< th	dose independent	rect.	23	1
986	619.56	precipitation	0.1	720	< th	dose independent	rect.	14	17
988	619.56	precipitation	0.1	720	< th	dose dependent	rect.	14	17