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Os05g0358500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0273) R2 : 0.904
β1 : 1.3 (0.102) R2dD : 0.0341 R2D : -0.00383
β2 : 3.57 (0.0754) R2dC : 0.546 R2C : 0.74
β3 : -3.11 (0.125) R2dE : 0.169 R2E : 0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.426 (0.0607) R2dN8 : 0.0129 R2N8 : -0.0185
σ : 0.507
deviance : 118.33
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C
peak time of C : 6.53
E
wheather : temperature
threshold : 10.83
memory length : 300
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.9
open length of G : 21.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.24 0.511 11.3 1.35 3.57 -3.09 0.216 0.787 0.423 6.61 12.88 290 12 21.2
118.66 0.507 11.3 1.3 3.61 -3.08 0.293 -- 0.397 6.57 11.82 293 12 21.3
118.11 0.506 11.3 1.37 3.59 -3.07 -- 0.906 0.421 6.57 11.83 294 12 21.3
118.33 0.507 11.3 1.3 3.57 -3.11 -- -- 0.426 6.53 10.83 300 11.9 21.3
542.14 1.08 11.4 2.11 -- -5.78 -- 7.6 0.41 -- 24.23 323 13.2 18.2
246.23 0.736 11.4 0.69 4.29 -- 0.864 -- -0.0638 7.16 -- -- -- --
248.2 0.738 11.4 0.707 4.29 -- -- -- -0.0659 7.15 -- -- -- --
174.9 0.616 11.4 1.32 -- -5.31 -- -- 0.231 -- 9.661 520 9.35 11.1
153.71 0.577 11.4 -- 3.76 -2.72 -- -- 0.228 6.38 8.038 284 12.1 20.9
1221.63 1.63 11.5 0.787 -- -- -- -- 0.00977 -- -- -- -- --
261.37 0.756 11.4 -- 4.3 -- -- -- -0.145 7.14 -- -- -- --
187.35 0.637 11.5 -- -- -4.85 -- -- 0.0439 -- -0.8721 406 11.2 9.62
1237.98 1.64 11.5 -- -- -- -- -- -0.0776 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.17 temperature 15 270 > th dose dependent rect. 12 21
26 137.36 temperature 30 270 < th dose dependent rect. 8 19
74 146.95 temperature 20 270 > th dose independent rect. 13 19
82 148.17 temperature 15 10 > th dose dependent rect. 15 19
97 150.33 temperature 20 270 > th dose independent rect. 12 21
106 151.42 temperature 20 90 > th dose independent rect. 15 18
112 151.82 temperature 15 270 > th dose dependent rect. 13 11
113 151.92 temperature 30 270 < th dose dependent rect. 17 10
140 153.72 temperature 30 270 < th dose dependent rect. 17 20
172 155.95 temperature 10 720 > th dose dependent rect. 5 20
215 157.89 temperature 15 270 > th dose dependent sin 17 NA
222 158.11 temperature 20 10 > th dose independent rect. 15 20
229 158.42 temperature 10 270 > th dose dependent rect. 21 23
256 158.90 temperature 10 720 > th dose dependent rect. 21 21
281 159.57 temperature 30 270 < th dose dependent sin 17 NA
316 160.33 temperature 10 270 > th dose dependent rect. 3 16
327 160.58 temperature 10 270 > th dose dependent rect. 22 10
482 163.98 temperature 10 270 > th dose dependent no NA NA
497 164.16 temperature 30 10 < th dose dependent rect. 20 17
550 164.90 temperature 30 90 < th dose dependent sin 14 NA
584 165.31 temperature 30 720 < th dose dependent rect. 24 22
676 166.50 temperature 15 1440 > th dose dependent rect. 1 8
691 166.71 temperature 30 1440 < th dose dependent rect. 1 8
717 166.91 temperature 25 1440 < th dose dependent rect. 22 13
838 167.63 temperature 25 1440 < th dose dependent rect. 3 1
859 167.74 temperature 15 1440 > th dose dependent sin 9 NA
899 167.96 temperature 25 1440 < th dose dependent sin 8 NA
952 168.14 temperature 15 1440 > th dose dependent rect. 3 1