Os05g0358200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA primase, small subunit family protein.
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Os05g0358200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA primase, small subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.74 | 0.503 | 6.01 | 1.84 | 1 | -0.615 | -0.444 | 0.451 | 0.725 | 4.36 | 20.5 | 271 | -- | -- |
| 115.45 | 0.5 | 6.02 | 1.78 | 0.994 | -0.665 | -0.627 | -- | 0.711 | 4.36 | 20.5 | 270 | -- | -- |
| 115.22 | 0.5 | 6.01 | 1.86 | 0.999 | -0.604 | -- | 0.571 | 0.73 | 4.37 | 20.5 | 270 | -- | -- |
| 116.5 | 0.503 | 6.02 | 1.76 | 0.992 | -0.652 | -- | -- | 0.711 | 4.36 | 20.5 | 270 | -- | -- |
| 153.38 | 0.577 | 5.96 | 2.02 | -- | -0.759 | -- | 0.567 | 1.01 | -- | 24.9 | 256 | -- | -- |
| 130.5 | 0.536 | 6.05 | 1.56 | 1.1 | -- | -0.584 | -- | 0.574 | 4.26 | -- | -- | -- | -- |
| 131.45 | 0.537 | 6.05 | 1.56 | 1.09 | -- | -- | -- | 0.577 | 4.28 | -- | -- | -- | -- |
| 153.54 | 0.577 | 5.98 | 1.81 | -- | -0.754 | -- | -- | 0.961 | -- | 24.9 | 256 | -- | -- |
| 191.72 | 0.645 | 6.07 | -- | 1.08 | -0.271 | -- | -- | 0.494 | 4.24 | 22.3 | 361 | -- | -- |
| 195.87 | 0.654 | 6.06 | 1.61 | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
| 195.95 | 0.655 | 6.09 | -- | 1.12 | -- | -- | -- | 0.403 | 4.25 | -- | -- | -- | -- |
| 237.35 | 0.718 | 6.04 | -- | -- | -0.58 | -- | -- | 0.664 | -- | 25.13 | 228 | -- | -- |
| 264.08 | 0.759 | 6.1 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 2 | 104.61 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 11 |
| 9 | 106.25 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 16 | 107.52 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 17 |
| 33 | 108.72 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 12 |
| 36 | 108.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 4 |
| 41 | 109.01 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 46 | 109.20 | temperature | 25 | 90 | < th | dose dependent | sin | 6 | NA |
| 49 | 109.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 69 | 109.73 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 73 | 109.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 93 | 110.19 | temperature | 20 | 30 | > th | dose independent | sin | 5 | NA |
| 112 | 110.48 | temperature | 20 | 30 | < th | dose independent | sin | 5 | NA |
| 126 | 110.67 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 18 |
| 147 | 110.92 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 16 |
| 202 | 111.50 | temperature | 15 | 30 | > th | dose dependent | sin | 7 | NA |
| 204 | 111.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 213 | 111.58 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 220 | 111.65 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 20 |
| 367 | 112.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 18 | 23 |
| 421 | 113.02 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 5 |
| 440 | 113.11 | humidity | 80 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 458 | 113.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 510 | 113.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 545 | 113.61 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 13 |
| 548 | 113.63 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 4 |
| 640 | 113.97 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 12 |
| 647 | 113.98 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 725 | 114.20 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 779 | 114.42 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 10 |
| 787 | 114.44 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 20 |
| 805 | 114.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 831 | 114.57 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 2 |
| 918 | 114.87 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 980 | 115.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |