Os05g0357200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os05g0357200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.04 | 0.27 | 11.4 | -0.674 | 0.982 | 0.988 | 0.285 | -1.32 | -0.0629 | 8.52 | 7.132 | 234 | -- | -- |
| 38.92 | 0.291 | 11.4 | -0.745 | 0.945 | 1.04 | 1.22 | -- | -0.0442 | 9.08 | 7.202 | 241 | -- | -- |
| 33.18 | 0.268 | 11.4 | -0.672 | 0.997 | 0.958 | -- | -1.43 | -0.066 | 8.36 | 7.366 | 224 | -- | -- |
| 43.38 | 0.307 | 11.4 | -0.67 | 0.991 | 0.884 | -- | -- | -0.0625 | 8.01 | 9.667 | 216 | -- | -- |
| 41.65 | 0.301 | 11.4 | -0.609 | -- | 1.46 | -- | -1.55 | -0.00296 | -- | 3.166 | 583 | -- | -- |
| 47.44 | 0.323 | 11.4 | -0.703 | 1.33 | -- | -1.09 | -- | -0.103 | 4.63 | -- | -- | -- | -- |
| 50.29 | 0.332 | 11.4 | -0.695 | 1.33 | -- | -- | -- | -0.0973 | 4.83 | -- | -- | -- | -- |
| 45.75 | 0.315 | 11.4 | -0.616 | -- | 1.49 | -- | -- | -0.0188 | -- | 3.15 | 611 | -- | -- |
| 55.02 | 0.345 | 11.4 | -- | 0.938 | 0.897 | -- | -- | 0.0192 | 7.91 | 13.51 | 229 | -- | -- |
| 143.37 | 0.56 | 11.4 | -0.646 | -- | -- | -- | -- | -0.063 | -- | -- | -- | -- | -- |
| 63.03 | 0.371 | 11.4 | -- | 1.31 | -- | -- | -- | -0.0199 | 4.85 | -- | -- | -- | -- |
| 54.41 | 0.344 | 11.4 | -- | -- | 1.52 | -- | -- | 0.0255 | -- | 0.009999 | 630 | -- | -- |
| 154.37 | 0.58 | 11.4 | -- | -- | -- | -- | -- | 0.00866 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 15 |
| 20 | 31.98 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 64 | 33.09 | radiation | 1 | 270 | > th | dose independent | sin | 0 | NA |
| 65 | 33.12 | radiation | 10 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 73 | 33.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 76 | 33.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 89 | 33.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 100 | 33.43 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 103 | 33.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 108 | 33.50 | radiation | 10 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 112 | 33.53 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 23 |
| 115 | 33.53 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 128 | 33.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 15 |
| 136 | 33.63 | radiation | 10 | 270 | < th | dose dependent | no | NA | NA |
| 151 | 33.72 | humidity | 70 | 10 | > th | dose independent | sin | 16 | NA |
| 160 | 33.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 13 |
| 199 | 33.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 13 |
| 202 | 33.98 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 224 | 34.09 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 14 |
| 336 | 34.50 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 23 |
| 341 | 34.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 343 | 34.52 | humidity | 60 | 270 | > th | dose independent | rect. | 15 | 14 |
| 402 | 34.67 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 23 |
| 407 | 34.69 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 13 |
| 454 | 34.77 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 13 |
| 462 | 34.79 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 11 |
| 466 | 34.80 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 11 |
| 523 | 34.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 596 | 35.07 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 17 |
| 624 | 35.15 | wind | 3 | 720 | > th | dose independent | rect. | 14 | 3 |
| 636 | 35.18 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 19 |
| 701 | 35.31 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 9 |
| 702 | 35.31 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 19 |
| 717 | 35.32 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 23 |
| 735 | 35.36 | radiation | 1 | 270 | > th | dose independent | no | NA | NA |
| 784 | 35.37 | radiation | 1 | 270 | < th | dose independent | no | NA | NA |
| 790 | 35.38 | radiation | 1 | 270 | < th | dose independent | rect. | 12 | 23 |
| 792 | 35.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 816 | 35.44 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 23 |
| 821 | 35.45 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 9 |
| 822 | 35.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 841 | 35.46 | humidity | 90 | 10 | < th | dose dependent | sin | 21 | NA |
| 867 | 35.50 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 10 |
| 899 | 35.55 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 4 |
| 920 | 35.59 | temperature | 15 | 270 | > th | dose independent | rect. | 22 | 15 |
| 949 | 35.63 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 14 |
| 953 | 35.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 964 | 35.65 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 2 |
| 973 | 35.66 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 14 |
| 974 | 35.66 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 17 |
| 1000 | 35.71 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |