Os05g0355500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein L29.
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Os05g0355500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein L29.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.78 | 0.422 | 14.4 | 0.139 | 1.27 | 0.329 | 0.695 | -1.55 | 0.115 | 18.4 | 20.5 | 2851 | -- | -- |
| 83.45 | 0.425 | 14.4 | 0.106 | 1.26 | 0.778 | 0.781 | -- | 0.121 | 18.6 | 18.4 | 14292 | -- | -- |
| 81.97 | 0.422 | 14.4 | 0.117 | 1.28 | 0.328 | -- | -1.59 | 0.115 | 18.4 | 20.6 | 2851 | -- | -- |
| 84.6 | 0.428 | 14.4 | 0.00567 | 1.27 | 0.858 | -- | -- | 0.116 | 18.5 | 17.11 | 22958 | -- | -- |
| 165.84 | 0.6 | 14.4 | 0.114 | -- | 0.357 | -- | -1.4 | 0.0923 | -- | 20.5 | 3624 | -- | -- |
| 91.42 | 0.448 | 14.3 | 0.742 | 1.26 | -- | 0.848 | -- | 0.334 | 18.5 | -- | -- | -- | -- |
| 93.22 | 0.452 | 14.3 | 0.73 | 1.26 | -- | -- | -- | 0.337 | 18.5 | -- | -- | -- | -- |
| 167.04 | 0.602 | 14.3 | 0.387 | -- | 0.687 | -- | -- | 0.169 | -- | 19.38 | 2085 | -- | -- |
| 84.46 | 0.428 | 14.4 | -- | 1.26 | 0.844 | -- | -- | 0.122 | 18.4 | 16.8 | 24256 | -- | -- |
| 175.71 | 0.619 | 14.3 | 0.698 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 107.27 | 0.484 | 14.4 | -- | 1.25 | -- | -- | -- | 0.256 | 18.5 | -- | -- | -- | -- |
| 167.32 | 0.602 | 14.4 | -- | -- | 0.88 | -- | -- | 0.119 | -- | 16.69 | 23909 | -- | -- |
| 188.57 | 0.641 | 14.3 | -- | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 77.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 8 | 78.56 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 12 | 78.84 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 23 | 79.33 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 26 | 79.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 34 | 79.76 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 37 | 79.81 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 39 | 79.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 45 | 79.92 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 51 | 79.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 126 | 80.40 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 129 | 80.41 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 134 | 80.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 135 | 80.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 136 | 80.44 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 140 | 80.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 146 | 80.48 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 157 | 80.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 160 | 80.56 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 173 | 80.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 193 | 80.66 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 204 | 80.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 252 | 80.88 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 269 | 80.93 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 270 | 80.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 285 | 80.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 286 | 80.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 313 | 81.01 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 324 | 81.02 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 379 | 81.19 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 387 | 81.22 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 394 | 81.22 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 403 | 81.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 409 | 81.26 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 443 | 81.32 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 451 | 81.34 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 456 | 81.35 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 457 | 81.35 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 482 | 81.40 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 483 | 81.40 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 490 | 81.41 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 541 | 81.50 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 544 | 81.50 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 547 | 81.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 581 | 81.55 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 597 | 81.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 617 | 81.58 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 637 | 81.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 652 | 81.63 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 655 | 81.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 677 | 81.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 686 | 81.67 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 707 | 81.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 711 | 81.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 715 | 81.70 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 717 | 81.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 727 | 81.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 735 | 81.72 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 745 | 81.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 751 | 81.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 766 | 81.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 767 | 81.75 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 936 | 81.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 958 | 81.92 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 967 | 81.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 991 | 81.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |