Os05g0355200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0355200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.5 | 0.324 | 11.2 | -0.0602 | 0.245 | 1.52 | -0.414 | 0.155 | -0.148 | 17.2 | 9.652 | 250 | -- | -- |
| 47.52 | 0.321 | 11.3 | -0.083 | 0.246 | 1.52 | -0.375 | -- | -0.154 | 17.2 | 9.745 | 249 | -- | -- |
| 47.35 | 0.32 | 11.3 | -0.127 | 0.335 | 1.47 | -- | -0.268 | -0.168 | 14.9 | 10.18 | 428 | -- | -- |
| 47.39 | 0.321 | 11.2 | -0.0868 | 0.335 | 1.45 | -- | -- | -0.157 | 14.9 | 14.7 | 428 | -- | -- |
| 50.14 | 0.33 | 11.3 | -0.161 | -- | 1.75 | -- | -0.146 | -0.2 | -- | 11.99 | 259 | -- | -- |
| 71.08 | 0.395 | 11.2 | 0.243 | 0.68 | -- | -0.00789 | -- | 0.0597 | 16.6 | -- | -- | -- | -- |
| 71.08 | 0.395 | 11.2 | 0.243 | 0.68 | -- | -- | -- | 0.0596 | 16.6 | -- | -- | -- | -- |
| 50.16 | 0.33 | 11.3 | -0.139 | -- | 1.75 | -- | -- | -0.193 | -- | 11.73 | 259 | -- | -- |
| 47.53 | 0.321 | 11.2 | -- | 0.345 | 1.41 | -- | -- | -0.141 | 15 | 14.7 | 428 | -- | -- |
| 95.69 | 0.457 | 11.2 | 0.217 | -- | -- | -- | -- | 0.0418 | -- | -- | -- | -- | -- |
| 72.64 | 0.399 | 11.2 | -- | 0.676 | -- | -- | -- | 0.0326 | 16.7 | -- | -- | -- | -- |
| 50.61 | 0.331 | 11.3 | -- | -- | 1.68 | -- | -- | -0.173 | -- | 14.7 | 259 | -- | -- |
| 96.93 | 0.46 | 11.2 | -- | -- | -- | -- | -- | 0.0178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 24 | 45.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 32 | 45.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 52 | 46.51 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 66 | 46.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 84 | 46.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 91 | 47.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 97 | 47.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 121 | 47.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 144 | 47.53 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 167 | 47.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 172 | 47.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 188 | 47.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 197 | 47.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 210 | 47.88 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 320 | 48.41 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 342 | 48.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 348 | 48.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 412 | 48.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 417 | 48.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 437 | 48.81 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 495 | 49.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 571 | 49.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 590 | 49.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 602 | 49.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 638 | 49.50 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 733 | 49.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 745 | 49.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 755 | 49.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 766 | 49.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 776 | 49.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 786 | 49.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 829 | 50.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 832 | 50.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 837 | 50.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 924 | 50.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 9 |