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Os05g0353500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.52 (0.0341) R2 : 0.805
β1 : -1.26 (0.125) R2dD : 0.0456 R2D : 0.0565
β2 : 1 (0.0871) R2dC : 0.0574 R2C : 0.0475
β3 : -2.59 (0.0643) R2dE : 0.698 R2E : 0.702
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.105 (0.0726) R2dN8 : 0.00125 R2N8 : -0.000567
σ : 0.636
deviance : 186.53
__
_____
C
peak time of C : 19.7
E
wheather : temperature
threshold : 15.07
memory length : 707
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 2.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.79 0.642 7.51 -1.26 1.02 -2.61 0.133 -0.00476 -0.11 19.8 15 706 18.3 2.98
186.62 0.636 7.51 -1.26 0.998 -2.6 0.0855 -- -0.105 19.8 15.06 706 18.3 2.97
186.65 0.636 7.51 -1.26 1.01 -2.6 -- 0.00937 -0.108 19.7 15.03 705 18.3 2.95
186.53 0.636 7.52 -1.26 1 -2.59 -- -- -0.105 19.7 15.07 707 18.3 2.92
216.49 0.685 7.49 -1.27 -- -2.68 -- 0.0284 -0.0749 -- 15.14 700 18.7 3.98
245.36 0.734 7.5 -1.37 3.37 -- 0.332 -- -0.129 15.1 -- -- -- --
245.72 0.734 7.5 -1.36 3.37 -- -- -- -0.127 15.1 -- -- -- --
216.13 0.685 7.48 -1.27 -- -2.69 -- -- -0.0682 -- 15.74 702 18.7 4
228.37 0.704 7.51 -- 1.02 -2.62 -- -- 0.0186 19.7 15 703 18.4 2.8
896.77 1.4 7.51 -1.5 -- -- -- -- -0.215 -- -- -- -- --
294.52 0.803 7.47 -- 3.4 -- -- -- 0.0248 15.1 -- -- -- --
258.21 0.748 7.47 -- -- -2.7 -- -- 0.0648 -- 17.36 697 18.6 4.15
956.48 1.44 7.47 -- -- -- -- -- -0.0476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.18 temperature 15.0 720 > th dose independent rect. 18 3
2 189.90 precipitation 0.1 720 < th dose independent rect. 21 21
3 189.90 precipitation 0.1 720 < th dose dependent rect. 21 21
5 193.70 radiation 1.0 720 < th dose independent rect. 18 3
6 195.42 temperature 15.0 90 > th dose independent rect. 19 12
10 197.20 temperature 30.0 720 < th dose independent rect. 18 3
11 197.36 wind 9.0 720 < th dose independent rect. 21 21
12 197.42 radiation 10.0 720 < th dose dependent rect. 18 3
13 197.90 atmosphere 1010.0 90 < th dose independent rect. 19 12
17 198.00 atmosphere 995.0 720 > th dose independent rect. 18 3
19 198.24 humidity 60.0 720 > th dose independent rect. 18 3
21 198.44 humidity 80.0 30 > th dose dependent rect. 5 17
23 198.60 humidity 50.0 90 > th dose dependent rect. 19 12
24 198.66 atmosphere 1010.0 720 < th dose independent rect. 19 2
25 198.66 precipitation 0.1 720 < th dose independent rect. 6 3
26 198.66 precipitation 0.1 720 < th dose dependent rect. 6 3
29 198.67 radiation 20.0 720 < th dose independent rect. 18 3
32 198.67 temperature 10.0 720 > th dose independent rect. 21 21
34 198.94 wind 9.0 720 < th dose independent rect. 6 3
35 198.94 temperature 10.0 720 > th dose independent rect. 6 3
36 198.94 humidity 50.0 720 > th dose independent rect. 6 3
37 198.94 atmosphere 995.0 720 > th dose independent rect. 6 3
38 198.94 atmosphere 1015.0 720 < th dose independent rect. 6 3
39 198.94 temperature 10.0 720 > th dose independent rect. 9 21
42 199.21 wind 9.0 720 < th dose independent rect. 18 3
45 199.87 radiation 10.0 270 < th dose dependent rect. 17 13
46 200.22 radiation 1.0 720 < th dose dependent rect. 4 17
48 200.49 precipitation 0.1 720 < th dose independent rect. 6 19
49 200.49 precipitation 0.1 720 < th dose dependent rect. 6 19
53 200.92 temperature 15.0 720 > th dose independent rect. 9 6
54 200.93 precipitation 0.1 720 < th dose independent rect. 6 12
55 200.93 precipitation 0.1 720 < th dose independent rect. 15 18
56 200.93 precipitation 0.1 720 < th dose dependent rect. 6 12
57 200.93 precipitation 0.1 720 < th dose dependent rect. 15 18
59 201.32 precipitation 0.1 720 < th dose independent rect. 13 5
60 201.32 precipitation 0.1 720 < th dose dependent rect. 13 5
61 201.33 temperature 15.0 720 > th dose independent rect. 10 11
64 201.78 wind 9.0 720 < th dose independent rect. 15 18
65 201.88 radiation 1.0 720 < th dose independent rect. 4 17
67 202.18 wind 9.0 720 < th dose independent rect. 13 5
70 202.54 radiation 30.0 90 < th dose dependent rect. 19 12
74 202.77 precipitation 0.1 720 < th dose independent rect. 21 13
75 202.77 precipitation 0.1 720 < th dose dependent rect. 21 13
86 202.94 precipitation 0.1 90 < th dose independent rect. 7 12
87 202.94 precipitation 0.1 90 < th dose dependent rect. 7 12
88 203.03 precipitation 0.1 720 < th dose independent rect. 22 11
89 203.03 precipitation 0.1 720 < th dose dependent rect. 22 11
90 203.14 wind 9.0 720 < th dose independent rect. 6 12
107 203.17 humidity 90.0 90 > th dose dependent rect. 5 2
108 203.29 radiation 40.0 720 < th dose independent rect. 6 3
111 203.43 humidity 90.0 90 > th dose independent rect. 5 2
115 203.63 radiation 1.0 720 > th dose independent rect. 15 18
117 203.72 temperature 15.0 720 > th dose independent rect. 9 13
120 203.93 temperature 30.0 720 < th dose independent rect. 18 12
132 204.51 humidity 50.0 270 > th dose dependent rect. 17 13
135 204.58 atmosphere 1015.0 90 < th dose dependent rect. 5 1
139 204.67 atmosphere 995.0 720 > th dose independent rect. 18 12
140 204.70 temperature 15.0 10 > th dose independent rect. 20 11
142 204.75 wind 7.0 720 < th dose independent rect. 21 6
143 204.75 wind 9.0 720 < th dose independent rect. 6 19
145 204.78 humidity 60.0 720 > th dose independent rect. 18 12
146 204.80 radiation 20.0 90 < th dose independent rect. 19 12
149 204.86 humidity 90.0 90 < th dose independent rect. 6 13
151 204.88 humidity 50.0 720 > th dose dependent rect. 19 2
155 204.99 humidity 80.0 30 > th dose independent rect. 5 17
156 205.00 precipitation 0.1 720 < th dose independent rect. 21 6
157 205.00 precipitation 0.1 720 < th dose dependent rect. 21 6
158 205.04 radiation 10.0 270 < th dose dependent rect. 11 19
162 205.10 temperature 10.0 90 > th dose independent rect. 7 12
164 205.10 temperature 30.0 90 < th dose independent rect. 19 12
165 205.10 humidity 50.0 90 > th dose independent rect. 19 12
167 205.10 atmosphere 995.0 90 > th dose independent rect. 19 12
168 205.10 atmosphere 1015.0 90 < th dose independent rect. 7 12
177 205.30 temperature 30.0 720 < th dose independent rect. 6 3
178 205.31 atmosphere 995.0 720 > th dose independent rect. 18 19
180 205.34 temperature 10.0 720 > th dose independent rect. 6 12
183 205.34 atmosphere 1015.0 720 < th dose independent rect. 6 12
184 205.34 radiation 20.0 720 < th dose independent rect. 18 12
189 205.41 humidity 60.0 90 > th dose dependent rect. 12 19
192 205.52 humidity 60.0 10 > th dose dependent rect. 20 12
194 205.53 wind 9.0 90 < th dose independent rect. 19 12
219 205.90 temperature 10.0 720 > th dose independent rect. 1 5
220 205.90 temperature 30.0 720 < th dose independent rect. 1 5
221 205.90 humidity 50.0 720 > th dose independent rect. 1 5
224 205.90 atmosphere 995.0 720 > th dose independent rect. 1 5
225 205.90 radiation 20.0 720 < th dose independent rect. 1 5
228 205.90 temperature 10.0 720 > th dose independent rect. 6 19
231 205.95 temperature 10.0 720 > th dose independent rect. 13 5
232 205.95 atmosphere 1015.0 720 < th dose independent rect. 13 5
233 205.95 temperature 10.0 720 > th dose independent rect. 18 19
234 205.98 atmosphere 995.0 720 > th dose independent rect. 9 6
235 206.00 wind 9.0 720 < th dose independent rect. 1 5
240 206.05 humidity 90.0 90 > th dose dependent rect. 5 5
245 206.15 radiation 30.0 720 < th dose dependent rect. 1 6
248 206.18 radiation 1.0 720 < th dose dependent sin 23 NA
250 206.20 humidity 60.0 10 > th dose dependent rect. 12 20
256 206.38 radiation 1.0 720 < th dose dependent rect. 21 6
257 206.39 temperature 10.0 720 > th dose independent rect. 21 6
258 206.39 temperature 30.0 720 < th dose independent rect. 21 6
259 206.39 humidity 50.0 720 > th dose independent rect. 21 6
262 206.39 atmosphere 995.0 720 > th dose independent rect. 21 6
263 206.39 radiation 1.0 720 < th dose independent rect. 21 6
268 206.39 temperature 10.0 720 > th dose independent rect. 3 18
273 206.44 wind 9.0 90 < th dose independent rect. 7 12
275 206.46 wind 7.0 720 < th dose independent rect. 22 11
279 206.58 wind 1.0 720 > th dose independent rect. 18 3
285 206.66 humidity 90.0 90 < th dose independent rect. 23 20
287 206.69 atmosphere 1015.0 720 < th dose independent rect. 9 6
288 206.69 temperature 10.0 720 > th dose independent rect. 15 18
291 206.71 radiation 1.0 270 < th dose independent rect. 23 23
292 206.74 wind 9.0 720 < th dose independent rect. 18 12
296 206.89 wind 9.0 720 < th dose independent rect. 21 13
298 207.01 radiation 1.0 270 < th dose independent rect. 17 15
305 207.13 humidity 90.0 10 < th dose independent rect. 7 13
307 207.15 atmosphere 1015.0 720 < th dose independent rect. 3 18
311 207.25 radiation 1.0 270 < th dose independent rect. 11 21
315 207.31 radiation 1.0 270 < th dose dependent rect. 23 23
316 207.32 humidity 80.0 30 > th dose dependent rect. 5 11
332 207.58 radiation 10.0 90 < th dose dependent rect. 19 22
333 207.62 temperature 10.0 720 > th dose independent rect. 22 11
334 207.62 humidity 50.0 720 > th dose independent rect. 22 11
335 207.62 atmosphere 995.0 720 > th dose independent rect. 22 11
338 207.66 temperature 10.0 720 > th dose independent rect. 21 13
339 207.66 atmosphere 995.0 720 > th dose independent rect. 21 13
341 207.69 radiation 1.0 270 < th dose independent rect. 15 17
376 208.03 radiation 10.0 90 < th dose independent rect. 19 14
380 208.10 humidity 50.0 720 > th dose independent rect. 21 13
389 208.17 radiation 1.0 270 > th dose independent rect. 6 23
391 208.20 radiation 1.0 270 > th dose independent rect. 6 13
419 208.47 humidity 70.0 10 > th dose dependent rect. 1 23
432 208.61 radiation 1.0 720 > th dose independent rect. 7 2
455 208.87 radiation 1.0 270 > th dose independent rect. 18 23
462 208.90 radiation 1.0 270 < th dose dependent rect. 1 21
464 208.91 precipitation 0.1 90 < th dose independent rect. 6 23
465 208.91 precipitation 0.1 90 < th dose dependent rect. 6 23
475 209.06 atmosphere 1015.0 720 < th dose independent rect. 10 11
484 209.14 wind 1.0 720 > th dose independent rect. 13 5
499 209.23 wind 1.0 90 > th dose independent rect. 7 12
500 209.23 humidity 80.0 90 > th dose dependent rect. 1 22
501 209.24 precipitation 0.1 90 < th dose independent rect. 19 12
502 209.24 precipitation 0.1 90 < th dose dependent rect. 19 12
506 209.30 atmosphere 1015.0 720 < th dose independent rect. 1 5
515 209.37 atmosphere 1015.0 90 < th dose dependent rect. 19 12
522 209.46 radiation 1.0 270 < th dose independent rect. 17 22
523 209.47 radiation 10.0 90 < th dose dependent rect. 5 1
530 209.58 precipitation 0.1 270 < th dose independent rect. 14 11
532 209.58 precipitation 0.1 270 < th dose dependent rect. 14 11
547 209.75 humidity 90.0 30 > th dose independent rect. 5 5
549 209.75 precipitation 0.1 720 < th dose independent rect. 9 6
552 209.75 precipitation 0.1 720 < th dose dependent rect. 9 6
562 209.85 wind 9.0 720 < th dose independent rect. 18 19
573 209.95 atmosphere 1015.0 10 < th dose dependent rect. 20 11
577 209.98 humidity 60.0 90 > th dose dependent rect. 15 16
597 210.17 radiation 10.0 90 < th dose independent rect. 5 1
605 210.23 humidity 50.0 720 > th dose independent rect. 18 19
627 210.41 wind 9.0 90 < th dose dependent rect. 5 1
684 210.81 humidity 70.0 10 > th dose dependent rect. 12 22
688 210.87 humidity 80.0 10 > th dose independent rect. 1 22
690 210.88 wind 7.0 90 < th dose independent rect. 5 1
692 210.88 temperature 10.0 90 > th dose independent rect. 5 1
694 210.88 temperature 30.0 90 < th dose independent rect. 5 1
695 210.88 humidity 50.0 90 > th dose independent rect. 5 1
698 210.88 atmosphere 995.0 90 > th dose independent rect. 5 1
699 210.88 atmosphere 1010.0 90 < th dose independent rect. 5 1
704 210.88 temperature 10.0 90 > th dose independent rect. 6 23
712 210.92 radiation 40.0 720 < th dose independent rect. 22 11
721 211.00 precipitation 0.1 90 < th dose independent rect. 5 1
722 211.00 precipitation 0.1 90 < th dose dependent rect. 5 1
732 211.04 radiation 1.0 270 < th dose independent rect. 7 23
750 211.10 humidity 60.0 10 > th dose dependent rect. 10 22
755 211.12 radiation 1.0 270 < th dose independent no NA NA
769 211.14 radiation 1.0 270 > th dose independent no NA NA
843 211.30 temperature 15.0 720 > th dose independent rect. 13 14
884 211.47 radiation 10.0 720 < th dose dependent sin 13 NA
893 211.50 radiation 1.0 720 < th dose independent sin 0 NA
923 211.72 wind 9.0 90 < th dose independent rect. 6 23
960 211.91 humidity 50.0 720 > th dose independent rect. 9 21
995 212.06 humidity 80.0 30 > th dose dependent rect. 5 23