Os05g0353300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os05g0353300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.36 | 0.333 | 14.9 | 1.52 | 0.961 | -1.12 | -0.341 | 2.31 | 0.212 | 22.9 | 26.92 | 1832 | -- | -- |
| 51.13 | 0.333 | 15 | 1.06 | 0.962 | -0.859 | -0.272 | -- | 0.136 | 22.9 | 26.66 | 1832 | -- | -- |
| 50.84 | 0.332 | 14.9 | 1.54 | 0.96 | -1.13 | -- | 2.36 | 0.21 | 22.9 | 26.99 | 1829 | -- | -- |
| 51.5 | 0.334 | 15 | 1.07 | 0.959 | -0.879 | -- | -- | 0.128 | 23 | 26.74 | 1833 | -- | -- |
| 105.24 | 0.48 | 15 | 1.05 | -- | -1.08 | -- | 0.953 | 0.144 | -- | 26.67 | 1651 | -- | -- |
| 74.6 | 0.405 | 15 | 0.815 | 0.896 | -- | -0.364 | -- | 0.106 | 23.3 | -- | -- | -- | -- |
| 75.16 | 0.406 | 15 | 0.829 | 0.897 | -- | -- | -- | 0.107 | 23.3 | -- | -- | -- | -- |
| 104.79 | 0.479 | 15 | 0.973 | -- | -1.01 | -- | -- | 0.135 | -- | 26.43 | 1652 | -- | -- |
| 79.3 | 0.415 | 15 | -- | 0.968 | -0.64 | -- | -- | -0.0243 | 23.3 | 28.65 | 1855 | -- | -- |
| 125.57 | 0.524 | 15 | 0.852 | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
| 93.27 | 0.452 | 15 | -- | 0.906 | -- | -- | -- | 0.0149 | 23.4 | -- | -- | -- | -- |
| 129.32 | 0.531 | 15 | -- | -- | -0.858 | -- | -- | 0.0259 | -- | 26.43 | 1652 | -- | -- |
| 144.71 | 0.561 | 15 | -- | -- | -- | -- | -- | 0.0214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 2 | 44.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 7 | 45.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 19 | 46.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 24 | 46.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 49 | 47.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 59 | 47.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 68 | 47.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 78 | 47.83 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 95 | 48.24 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 111 | 48.36 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 141 | 48.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 145 | 48.63 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 146 | 48.63 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 150 | 48.64 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 152 | 48.65 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 155 | 48.71 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 17 |
| 156 | 48.72 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 161 | 48.75 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 162 | 48.75 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 163 | 48.76 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 164 | 48.77 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 166 | 48.77 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 177 | 48.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 178 | 48.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 179 | 48.86 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 181 | 48.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 197 | 48.92 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 199 | 48.93 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 212 | 49.00 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 225 | 49.04 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 238 | 49.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 266 | 49.22 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 282 | 49.25 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 318 | 49.38 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 326 | 49.40 | radiation | 1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 332 | 49.43 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 333 | 49.43 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 334 | 49.43 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 335 | 49.44 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 339 | 49.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 342 | 49.45 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 370 | 49.51 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 17 |
| 380 | 49.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 421 | 49.62 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 444 | 49.68 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 505 | 49.77 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 519 | 49.80 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 580 | 49.89 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 590 | 49.91 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 592 | 49.92 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 596 | 49.93 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 597 | 49.93 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 646 | 50.02 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 651 | 50.04 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 684 | 50.10 | wind | 7 | 43200 | > th | dose independent | sin | 7 | NA |
| 685 | 50.10 | wind | 7 | 43200 | < th | dose independent | sin | 6 | NA |
| 741 | 50.16 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 786 | 50.24 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 791 | 50.25 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 804 | 50.28 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 858 | 50.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 887 | 50.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 894 | 50.42 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 923 | 50.46 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 953 | 50.52 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |