Os05g0350900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0350900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.81 | 0.766 | 3.09 | 0.199 | 0.0889 | 3.75 | 1.02 | -5.33 | 0.754 | 3.98 | 0.3215 | 261 | -- | -- |
| 268.34 | 0.763 | 3.08 | 0.281 | 0.0992 | 3.6 | 1.26 | -- | 0.715 | 4.04 | 0.4241 | 111 | -- | -- |
| 268.74 | 0.764 | 3.1 | 0.196 | 0.101 | 3.66 | -- | -5.05 | 0.75 | 2.45 | 0.3244 | 261 | -- | -- |
| 271.58 | 0.768 | 3.08 | 0.263 | 0.104 | 3.15 | -- | -- | 0.736 | 3.17 | 0.5003 | 79 | -- | -- |
| 269.31 | 0.764 | 3.1 | 0.195 | -- | 3.54 | -- | -4.6 | 0.75 | -- | 0.3373 | 261 | -- | -- |
| 280.45 | 0.785 | 3.08 | 0.393 | 0.11 | -- | 0.949 | -- | 0.715 | 2.32 | -- | -- | -- | -- |
| 283.67 | 0.789 | 3.09 | 0.367 | 0.116 | -- | -- | -- | 0.71 | 0.974 | -- | -- | -- | -- |
| 272.3 | 0.769 | 3.08 | 0.31 | -- | 2.91 | -- | -- | 0.724 | -- | 0.795 | 86 | -- | -- |
| 272.27 | 0.769 | 3.09 | -- | 0.118 | 2.82 | -- | -- | 0.703 | 2.63 | 0.4964 | 111 | -- | -- |
| 284.51 | 0.788 | 3.09 | 0.371 | -- | -- | -- | -- | 0.712 | -- | -- | -- | -- | -- |
| 287.22 | 0.793 | 3.1 | -- | 0.122 | -- | -- | -- | 0.669 | 1.1 | -- | -- | -- | -- |
| 271.05 | 0.767 | 3.09 | -- | -- | 2.21 | -- | -- | 0.714 | -- | 0.4041 | 286 | -- | -- |
| 288.14 | 0.792 | 3.1 | -- | -- | -- | -- | -- | 0.671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.21 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 16 | 256.43 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 76 | 257.41 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 119 | 259.19 | humidity | 90.0 | 90 | > th | dose dependent | sin | 21 | NA |
| 123 | 259.54 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 125 | 259.80 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 6 | 20 |
| 264 | 262.17 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 13 |
| 272 | 262.52 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 16 |
| 282 | 262.86 | precipitation | 0.1 | 270 | < th | dose independent | sin | 22 | NA |
| 283 | 262.86 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 22 | NA |
| 286 | 262.96 | precipitation | 0.1 | 270 | > th | dose independent | sin | 22 | NA |
| 308 | 263.47 | humidity | 90.0 | 270 | > th | dose independent | sin | 21 | NA |
| 348 | 264.16 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 14 |
| 365 | 264.26 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 11 |
| 384 | 264.43 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 24 | 17 |
| 391 | 264.53 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 7 |
| 398 | 264.59 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 5 |
| 409 | 264.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 421 | 264.74 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 11 |
| 425 | 264.75 | precipitation | 0.1 | 270 | < th | dose independent | sin | 18 | NA |
| 426 | 264.75 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 18 | NA |
| 460 | 265.01 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 7 |
| 556 | 265.28 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 4 |
| 579 | 265.35 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 16 | NA |
| 648 | 265.66 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 9 |
| 660 | 265.71 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 677 | 265.79 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 13 | 11 |
| 725 | 265.91 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 22 |
| 775 | 265.97 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 787 | 266.00 | precipitation | 0.1 | 270 | > th | dose independent | no | NA | NA |
| 788 | 266.00 | precipitation | 0.1 | 270 | < th | dose independent | no | NA | NA |
| 789 | 266.00 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 22 |
| 792 | 266.00 | precipitation | 0.1 | 270 | < th | dose dependent | no | NA | NA |
| 795 | 266.01 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 9 | 23 |
| 820 | 266.09 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 23 |
| 822 | 266.09 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 13 | 7 |
| 823 | 266.09 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 867 | 266.15 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 20 | NA |
| 874 | 266.18 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 19 |
| 884 | 266.20 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 17 | 3 |
| 958 | 266.31 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 8 |
| 997 | 266.39 | wind | 9.0 | 90 | > th | dose independent | rect. | 11 | 8 |