Os05g0349400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0349400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.83 | 0.558 | 5.79 | -0.115 | 2.53 | 3.28 | 0.76 | -3.25 | 0.0901 | 21.3 | 20.3 | 409 | -- | -- |
| 146.16 | 0.563 | 5.73 | 0.406 | 2.49 | 3.52 | 0.537 | -- | 0.256 | 21.1 | 17 | 457 | -- | -- |
| 142.81 | 0.557 | 5.79 | -0.0824 | 2.53 | 3.27 | -- | -2.93 | 0.105 | 21.3 | 20.3 | 408 | -- | -- |
| 146.15 | 0.563 | 5.73 | 0.387 | 2.49 | 3.46 | -- | -- | 0.253 | 20.9 | 16.8 | 489 | -- | -- |
| 389.88 | 0.92 | 5.82 | -0.908 | -- | 4.91 | -- | -5.32 | -0.242 | -- | 22.03 | 608 | -- | -- |
| 313.52 | 0.83 | 5.62 | 1.25 | 3.41 | -- | 0.74 | -- | 0.819 | 20.2 | -- | -- | -- | -- |
| 315.21 | 0.831 | 5.62 | 1.23 | 3.41 | -- | -- | -- | 0.82 | 20.2 | -- | -- | -- | -- |
| 408.44 | 0.941 | 5.71 | 0.102 | -- | 4.55 | -- | -- | 0.00248 | -- | 21.08 | 615 | -- | -- |
| 149.59 | 0.57 | 5.74 | -- | 2.45 | 3.66 | -- | -- | 0.184 | 21 | 16.6 | 493 | -- | -- |
| 957.45 | 1.45 | 5.54 | 1.21 | -- | -- | -- | -- | 0.781 | -- | -- | -- | -- | -- |
| 355.15 | 0.882 | 5.65 | -- | 3.4 | -- | -- | -- | 0.682 | 20.3 | -- | -- | -- | -- |
| 408.69 | 0.942 | 5.72 | -- | -- | 4.58 | -- | -- | -0.0146 | -- | 21.02 | 615 | -- | -- |
| 995.82 | 1.47 | 5.57 | -- | -- | -- | -- | -- | 0.647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 6 | 141.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 10 | 141.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 15 | 142.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 30 | 144.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 35 | 145.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 46 | 145.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 51 | 146.25 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 128 | 147.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 136 | 147.75 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 176 | 148.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 329 | 149.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 348 | 149.34 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 400 | 149.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 430 | 149.87 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 536 | 150.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 557 | 150.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 651 | 150.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 752 | 151.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 783 | 151.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 853 | 151.67 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |