Os05g0349000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0349000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.66 | 0.507 | 5.84 | 1.02 | 1.21 | 1.48 | -0.147 | 2.29 | 0.446 | 19.2 | 20 | 5671 | -- | -- |
| 123.73 | 0.518 | 5.95 | 1.07 | 1.15 | 1.09 | -0.176 | -- | 0.341 | 19.3 | 21.6 | 5317 | -- | -- |
| 116.72 | 0.503 | 5.84 | 1.02 | 1.21 | 1.48 | -- | 2.29 | 0.446 | 19.2 | 20 | 5670 | -- | -- |
| 118.2 | 0.506 | 5.93 | 0.96 | 1.2 | 0.832 | -- | -- | 0.353 | 19.2 | 22.16 | 3985 | -- | -- |
| 191.19 | 0.644 | 5.81 | 1.02 | -- | 1.6 | -- | 2.45 | 0.43 | -- | 20 | 5100 | -- | -- |
| 140.61 | 0.556 | 5.87 | 1.4 | 1.2 | -- | -0.0782 | -- | 0.669 | 19.3 | -- | -- | -- | -- |
| 140.63 | 0.555 | 5.87 | 1.41 | 1.2 | -- | -- | -- | 0.669 | 19.3 | -- | -- | -- | -- |
| 181.59 | 0.628 | 5.93 | 1.04 | -- | 1.06 | -- | -- | 0.3 | -- | 25.2 | 1997 | -- | -- |
| 129.46 | 0.53 | 5.98 | -- | 1.22 | 1.29 | -- | -- | 0.163 | 19.3 | 21.06 | 7147 | -- | -- |
| 216.81 | 0.688 | 5.84 | 1.39 | -- | -- | -- | -- | 0.649 | -- | -- | -- | -- | -- |
| 192.71 | 0.649 | 5.9 | -- | 1.18 | -- | -- | -- | 0.513 | 19.4 | -- | -- | -- | -- |
| 203.36 | 0.664 | 5.95 | -- | -- | 1.37 | -- | -- | 0.186 | -- | 21 | 6472 | -- | -- |
| 267.46 | 0.763 | 5.87 | -- | -- | -- | -- | -- | 0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 2 | 115.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 4 | 116.14 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 5 | 116.18 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 6 | 116.22 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 12 | 116.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 16 | 116.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 22 | 116.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 17 |
| 29 | 116.43 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 6 |
| 45 | 116.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 47 | 116.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 51 | 116.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 140 | 116.67 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 167 | 116.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 206 | 116.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 13 |
| 214 | 116.80 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 253 | 116.87 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 377 | 117.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 401 | 117.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 411 | 117.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 21 |
| 415 | 117.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 3 |
| 423 | 117.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 429 | 117.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 19 |
| 431 | 117.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 444 | 117.22 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 459 | 117.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 581 | 117.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 833 | 117.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 938 | 117.87 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 972 | 117.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 989 | 117.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 999 | 117.97 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |