FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0348700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.029) R2 : 0.00373
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0797 (0.061) R2dN8 : 0.00482 R2N8 : 0.00373
σ : 0.546
deviance : 136.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.52 0.535 2.86 -0.105 0.213 0.636 -0.561 2.13 0.0634 6.95 1015 669 -- --
131.8 0.539 2.85 -0.0721 0.207 0.619 -0.623 -- 0.0727 7.16 1015 312 -- --
130.2 0.531 2.86 -0.114 0.221 0.628 -- 2.28 0.0656 6.23 1015 622 -- --
132.59 0.54 2.85 -0.0873 0.218 0.591 -- -- 0.0724 6.03 1015 312 -- --
132.68 0.536 2.86 -0.111 -- 0.602 -- 2.22 0.069 -- 1015 614 -- --
133.3 0.541 2.86 -0.0745 0.205 -- -0.603 -- 0.0653 6.93 -- -- -- --
133.94 0.542 2.86 -0.0882 0.218 -- -- -- 0.0655 5.69 -- -- -- --
135.05 0.544 2.86 -0.081 -- 0.587 -- -- 0.0773 -- 1015 290 -- --
132.79 0.54 2.85 -- 0.217 0.592 -- -- 0.0821 6.05 1015 311 -- --
136.42 0.546 2.86 -0.0812 -- -- -- -- 0.0707 -- -- -- -- --
134.15 0.542 2.85 -- 0.217 -- -- -- 0.0753 5.71 -- -- -- --
135.23 0.543 2.86 -- -- 0.587 -- -- 0.0863 -- 1015 290 -- --
136.59 0.546 2.86 -- -- -- -- -- 0.0797 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.75 radiation 1.0 90 < th dose independent rect. 10 1
3 115.75 radiation 1.0 90 < th dose dependent rect. 10 1
5 115.82 radiation 1.0 10 < th dose independent rect. 7 5
7 115.82 radiation 1.0 10 < th dose dependent rect. 7 5
11 116.56 radiation 1.0 10 < th dose independent rect. 11 1
28 116.56 radiation 1.0 10 < th dose dependent rect. 11 1
91 123.07 radiation 10.0 10 > th dose independent rect. 6 1
117 123.07 radiation 10.0 10 > th dose dependent rect. 6 1
149 123.91 radiation 1.0 1440 < th dose independent rect. 11 1
150 123.91 radiation 1.0 1440 < th dose dependent rect. 11 1
171 124.99 radiation 1.0 1440 < th dose independent rect. 9 3
172 124.99 radiation 1.0 1440 < th dose dependent rect. 9 3
173 125.05 radiation 1.0 1440 > th dose independent rect. 11 1
184 125.49 radiation 1.0 1440 > th dose independent rect. 9 3
185 125.53 radiation 20.0 10 < th dose independent rect. 12 1
188 125.59 radiation 1.0 1440 > th dose independent rect. 9 1
189 125.67 humidity 80.0 30 > th dose dependent rect. 6 1
192 125.77 atmosphere 1015.0 10 < th dose independent rect. 5 23
194 125.78 wind 3.0 30 < th dose dependent rect. 6 1
210 126.28 atmosphere 1005.0 30 > th dose dependent rect. 6 1
219 126.51 temperature 30.0 30 < th dose dependent rect. 6 1
223 126.66 wind 1.0 10 > th dose independent rect. 4 1
238 127.27 radiation 1.0 720 > th dose independent rect. 4 1
248 127.27 radiation 1.0 720 > th dose dependent rect. 4 1
267 127.46 temperature 20.0 10 > th dose independent rect. 6 1
271 127.55 wind 3.0 30 < th dose independent rect. 6 1
289 127.74 humidity 80.0 10 > th dose independent rect. 6 1
299 127.92 temperature 10.0 10 > th dose independent rect. 6 1
301 127.92 temperature 30.0 10 < th dose independent rect. 6 1
302 127.92 humidity 50.0 10 > th dose independent rect. 6 1
305 127.92 atmosphere 995.0 10 > th dose independent rect. 6 1
306 127.92 atmosphere 1015.0 10 < th dose independent rect. 6 1
307 127.92 radiation 20.0 10 < th dose independent rect. 6 1
310 127.92 precipitation 0.1 10 < th dose independent rect. 6 1
311 127.92 temperature 10.0 10 > th dose independent rect. 7 23
312 127.92 precipitation 0.1 10 < th dose dependent rect. 6 1
314 127.97 radiation 20.0 10 < th dose independent rect. 11 4
318 127.98 radiation 40.0 10 < th dose dependent rect. 6 1
329 128.07 atmosphere 1005.0 10 > th dose dependent rect. 22 7
332 128.09 wind 1.0 30 > th dose independent rect. 6 1
356 128.19 humidity 60.0 14400 > th dose independent rect. 5 3
361 128.27 humidity 60.0 14400 < th dose independent rect. 6 1
363 128.27 humidity 60.0 14400 < th dose independent rect. 20 1
365 128.27 radiation 20.0 14400 > th dose independent rect. 17 1
416 128.27 humidity 60.0 14400 < th dose dependent rect. 6 1
418 128.27 humidity 60.0 14400 < th dose dependent rect. 20 1
420 128.27 radiation 20.0 14400 > th dose dependent rect. 17 1
473 128.33 temperature 10.0 10 > th dose dependent rect. 6 1
476 128.35 atmosphere 1005.0 10 > th dose dependent rect. 4 1
481 128.38 humidity 60.0 14400 > th dose independent rect. 21 8
482 128.38 radiation 20.0 10 < th dose independent rect. 11 20
487 128.39 wind 9.0 1440 < th dose independent rect. 7 1
488 128.39 temperature 10.0 1440 > th dose independent rect. 7 1
492 128.39 temperature 30.0 1440 < th dose independent rect. 7 1
496 128.39 humidity 50.0 1440 > th dose independent rect. 7 1
501 128.39 atmosphere 995.0 1440 > th dose independent rect. 7 1
502 128.39 atmosphere 1015.0 1440 < th dose independent rect. 7 1
503 128.39 temperature 10.0 1440 > th dose independent rect. 8 23
506 128.40 radiation 30.0 14400 < th dose independent rect. 17 11
507 128.40 radiation 1.0 10 < th dose dependent rect. 4 10
512 128.43 atmosphere 1015.0 4320 > th dose dependent rect. 6 1
515 128.45 atmosphere 1015.0 720 < th dose independent rect. 5 16
524 128.51 humidity 90.0 30 < th dose independent rect. 6 1
547 128.58 temperature 20.0 10 > th dose dependent rect. 4 1
558 128.59 atmosphere 1005.0 90 > th dose dependent rect. 22 1
560 128.60 radiation 20.0 10 < th dose dependent rect. 11 20
564 128.61 radiation 40.0 14400 < th dose independent rect. 16 13
575 128.72 atmosphere 1005.0 10 > th dose dependent rect. 22 2
580 128.76 humidity 60.0 14400 > th dose independent rect. 20 3
581 128.76 atmosphere 1015.0 720 < th dose independent rect. 18 23
583 128.77 temperature 20.0 10 > th dose independent rect. 4 1
586 128.79 atmosphere 1005.0 10 > th dose independent rect. 4 1
591 128.81 atmosphere 1005.0 10 > th dose independent rect. 22 7
600 128.85 wind 9.0 10 < th dose independent rect. 5 23
604 128.87 atmosphere 1015.0 30 < th dose independent rect. 3 23
614 128.91 temperature 20.0 90 < th dose dependent rect. 22 1
615 128.91 atmosphere 1005.0 10 < th dose dependent rect. 4 2
620 128.92 atmosphere 1015.0 30 < th dose independent rect. 23 23
624 128.93 humidity 60.0 14400 > th dose independent rect. 21 5
627 128.93 humidity 50.0 14400 < th dose dependent rect. 17 18
629 128.94 atmosphere 1005.0 43200 < th dose dependent rect. 9 1
632 128.95 radiation 40.0 14400 > th dose independent rect. 15 1
649 128.95 atmosphere 1015.0 720 < th dose independent rect. 19 16
663 128.99 humidity 80.0 10 > th dose independent rect. 4 1
665 128.99 precipitation 0.1 10 < th dose independent rect. 4 1
681 128.99 precipitation 0.1 10 < th dose dependent rect. 4 1
683 129.00 wind 3.0 10 < th dose independent rect. 4 1
684 129.00 wind 9.0 10 < th dose independent rect. 4 1
685 129.00 temperature 10.0 10 > th dose independent rect. 4 1
687 129.00 temperature 30.0 10 < th dose independent rect. 4 1
688 129.00 humidity 50.0 10 > th dose independent rect. 4 1
692 129.00 atmosphere 1010.0 10 < th dose independent rect. 4 1
694 129.00 radiation 1.0 10 < th dose independent rect. 4 1
701 129.00 temperature 10.0 10 > th dose independent rect. 5 23
702 129.00 radiation 40.0 4320 > th dose dependent rect. 15 1
731 129.01 radiation 20.0 10 < th dose dependent rect. 4 1
789 129.07 humidity 50.0 14400 < th dose dependent rect. 9 1
807 129.08 atmosphere 1015.0 720 < th dose independent sin 10 NA
810 129.08 radiation 10.0 14400 > th dose dependent rect. 5 1
826 129.09 radiation 30.0 14400 < th dose independent rect. 16 7
847 129.11 humidity 50.0 10 > th dose dependent rect. 4 1
872 129.14 radiation 30.0 14400 < th dose independent rect. 16 2
894 129.15 atmosphere 1000.0 43200 < th dose dependent rect. 4 6
899 129.15 atmosphere 1005.0 10 > th dose dependent rect. 12 17
903 129.16 radiation 1.0 10 < th dose dependent rect. 4 8
913 129.18 atmosphere 1015.0 10 < th dose dependent rect. 6 1
953 129.21 atmosphere 1015.0 720 < th dose independent sin 23 NA
964 129.21 radiation 20.0 10 < th dose dependent rect. 4 11
986 129.23 atmosphere 1005.0 10 > th dose dependent sin 11 NA
994 129.24 atmosphere 1015.0 720 < th dose independent rect. 23 8
995 129.24 radiation 1.0 10 < th dose independent rect. 4 10