Os05g0348100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0348100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.84 | 0.357 | 12.5 | -0.233 | 1.31 | 0.98 | -0.573 | 2.84 | -0.562 | 21.9 | 1.19 | 7118 | -- | -- |
| 68.64 | 0.386 | 12.5 | -0.538 | 1.42 | 0.608 | -0.426 | -- | -0.696 | 22 | 31.06 | 9480 | -- | -- |
| 58.74 | 0.357 | 12.5 | -0.251 | 1.32 | 0.999 | -- | 2.79 | -0.564 | 21.9 | 1.18 | 7179 | -- | -- |
| 67.45 | 0.383 | 12.5 | -0.573 | 1.4 | 0.535 | -- | -- | -0.712 | 22.1 | 30.14 | 9104 | -- | -- |
| 117.9 | 0.508 | 12.4 | -0.656 | -- | -0.825 | -- | 0.377 | -0.459 | -- | 1.77 | 9714 | -- | -- |
| 74.73 | 0.405 | 12.5 | -0.683 | 1.41 | -- | -0.268 | -- | -0.494 | 22 | -- | -- | -- | -- |
| 75.02 | 0.406 | 12.5 | -0.672 | 1.41 | -- | -- | -- | -0.493 | 22 | -- | -- | -- | -- |
| 98.93 | 0.463 | 12.4 | -0.493 | -- | 1.43 | -- | -- | -0.715 | -- | 2.153 | 1141 | -- | -- |
| 76.69 | 0.408 | 12.5 | -- | 1.34 | 0.56 | -- | -- | -0.59 | 22 | 36.59 | 19867 | -- | -- |
| 194.93 | 0.652 | 12.4 | -0.654 | -- | -- | -- | -- | -0.492 | -- | -- | -- | -- | -- |
| 86.92 | 0.436 | 12.5 | -- | 1.41 | -- | -- | -- | -0.418 | 22 | -- | -- | -- | -- |
| 96.12 | 0.457 | 12.4 | -- | -- | 2.06 | -- | -- | -0.481 | -- | 1.629 | 1134 | -- | -- |
| 206.23 | 0.67 | 12.4 | -- | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.04 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 8 |
| 5 | 54.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 6 | 54.44 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 21 | 54.81 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 35 | 55.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 43 | 55.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 69 | 55.62 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 90 | 55.98 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 102 | 56.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 115 | 56.23 | temperature | 25 | 720 | < th | dose independent | sin | 3 | NA |
| 117 | 56.23 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 142 | 56.51 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 147 | 56.58 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 160 | 56.67 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 177 | 56.76 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 180 | 56.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 188 | 56.85 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 194 | 56.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 200 | 56.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 220 | 56.96 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 12 |
| 223 | 56.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 227 | 56.98 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 229 | 56.99 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 246 | 57.05 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 258 | 57.08 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 260 | 57.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 263 | 57.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 266 | 57.11 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 267 | 57.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 272 | 57.13 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 273 | 57.13 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 298 | 57.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 11 |
| 316 | 57.22 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 319 | 57.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 330 | 57.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 342 | 57.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 354 | 57.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 356 | 57.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 360 | 57.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 386 | 57.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 396 | 57.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 401 | 57.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 405 | 57.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 17 |
| 410 | 57.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 415 | 57.34 | radiation | 1 | 14400 | < th | dose independent | sin | 22 | NA |
| 418 | 57.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 427 | 57.36 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 428 | 57.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 437 | 57.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 460 | 57.37 | radiation | 1 | 14400 | > th | dose independent | sin | 21 | NA |
| 468 | 57.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 469 | 57.37 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 491 | 57.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 500 | 57.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 520 | 57.39 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 576 | 57.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 581 | 57.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 582 | 57.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 603 | 57.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 616 | 57.41 | radiation | 1 | 14400 | < th | dose independent | sin | 14 | NA |
| 627 | 57.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 697 | 57.44 | temperature | 25 | 14400 | > th | dose dependent | sin | 8 | NA |
| 702 | 57.45 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 713 | 57.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 762 | 57.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 771 | 57.46 | radiation | 1 | 14400 | > th | dose independent | sin | 14 | NA |
| 813 | 57.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 829 | 57.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 20 |