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Os05g0344200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0664) R2 : 0.755
β1 : 0.162 (0.243) R2dD : 0.000262 R2D : -0.0109
β2 : 2.68 (0.197) R2dC : 0.133 R2C : 0.329
β3 : 3.39 (0.156) R2dE : 0.341 R2E : 0.555
β4 : 3.36 (0.936) R2dD*C : 0.0112 R2D*C : -0.00976
β5 : -2.66 (0.685) R2dD*E : 0.013 R2D*E : -0.019
γ1 : 1.38 (0.142) R2dN8 : 0.0688 R2N8 : 0.0611
σ : 1.25
deviance : 706.94
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C
peak time of C : 19.7
E
wheather : radiation
threshold : 20.45
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.95
open length of G : 23.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
706.94 1.25 11.7 0.162 2.68 3.39 3.36 -2.66 1.38 19.7 20.45 10 5.95 23.1
731.82 1.26 11.7 0.203 2.75 3.43 1.84 -- 1.32 19.3 19.09 9 5.92 23.1
726.8 1.26 11.7 0.125 2.67 3.44 -- -1.19 1.4 19.6 20.41 10 5.93 23.1
734.31 1.26 11.7 0.155 2.68 3.39 -- -- 1.41 19.6 20.32 10 5.93 23.1
976.08 1.46 11.7 0.0598 -- 4.41 -- -0.948 1.27 -- 17.18 10 5.97 23
967.9 1.46 11.8 -0.0145 5.41 -- 0.313 -- 1.5 21.8 -- -- -- --
968.27 1.46 11.8 -0.0268 5.41 -- -- -- 1.5 21.8 -- -- -- --
980.53 1.46 11.7 0.0678 -- 4.34 -- -- 1.4 -- 16.11 10 5.98 23
733.55 1.26 11.7 -- 2.75 3.46 -- -- 1.42 19.5 20.89 15 5.87 23.2
2713.39 2.43 11.6 0.0275 -- -- -- -- 1.5 -- -- -- -- --
968.29 1.46 11.8 -- 5.41 -- -- -- 1.51 21.8 -- -- -- --
980.46 1.46 11.6 -- -- 4.35 -- -- 1.43 -- 15.67 10 5.98 23
2713.41 2.43 11.6 -- -- -- -- -- 1.49 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 734.94 radiation 20 10 < th dose dependent rect. 6 23
8 801.43 radiation 10 10 < th dose independent rect. 6 23
10 803.91 radiation 20 10 < th dose dependent rect. 21 23
11 804.84 radiation 20 10 < th dose dependent no NA NA
12 804.93 radiation 20 10 < th dose dependent rect. 13 23
13 805.55 radiation 20 10 < th dose dependent rect. 11 23
14 806.10 radiation 20 10 < th dose dependent rect. 15 23
18 808.79 radiation 1 10 > th dose independent rect. 7 23
31 814.66 radiation 1 10 > th dose independent sin 1 NA
32 814.88 radiation 10 10 < th dose dependent rect. 9 23
33 815.78 radiation 20 10 < th dose dependent rect. 23 23
38 819.14 radiation 1 10 > th dose independent rect. 9 21
39 819.62 radiation 20 10 < th dose dependent rect. 17 23
44 820.72 radiation 20 10 < th dose dependent rect. 1 23
53 823.18 temperature 20 720 > th dose independent rect. 23 4
65 826.47 radiation 20 10 < th dose dependent sin 3 NA
69 827.42 radiation 10 10 > th dose independent rect. 9 23
70 827.46 humidity 70 10 > th dose dependent rect. 6 23
86 829.98 radiation 1 10 < th dose independent sin 1 NA
90 831.13 radiation 20 10 < th dose dependent rect. 1 15
91 831.13 humidity 80 1440 < th dose dependent rect. 21 16
93 831.52 humidity 80 1440 < th dose dependent sin 7 NA
98 832.15 humidity 80 1440 < th dose dependent rect. 23 14
121 834.09 humidity 80 10 > th dose independent rect. 1 19
159 836.98 radiation 1 10 < th dose independent rect. 21 23
183 839.51 radiation 20 10 < th dose dependent rect. 12 17
184 839.52 radiation 20 10 < th dose dependent rect. 19 23
190 839.62 radiation 1 10 < th dose independent rect. 1 19
202 840.43 radiation 20 10 < th dose dependent rect. 1 19
212 841.25 humidity 80 1440 < th dose independent rect. 2 12
231 841.97 humidity 80 1440 > th dose independent rect. 2 12
237 842.28 humidity 80 1440 < th dose independent rect. 4 10
247 842.81 humidity 70 1440 > th dose independent rect. 19 18
248 842.83 radiation 20 10 < th dose independent rect. 1 14
250 842.94 temperature 10 270 > th dose dependent rect. 23 10
258 843.23 humidity 80 10 > th dose independent rect. 1 15
263 843.73 radiation 40 90 < th dose dependent rect. 13 15
267 843.79 radiation 10 10 < th dose dependent rect. 6 10
268 843.87 radiation 1 10 < th dose dependent rect. 1 19
308 845.28 radiation 1 10 > th dose independent rect. 17 23
319 845.72 humidity 70 1440 > th dose independent rect. 9 4
327 846.08 radiation 1 10 < th dose independent rect. 23 23
351 847.02 radiation 10 30 > th dose independent rect. 7 11
387 847.67 radiation 20 10 < th dose dependent rect. 23 21
396 847.93 radiation 1 10 < th dose independent rect. 1 23
406 848.07 humidity 70 1440 > th dose independent sin 8 NA
412 848.28 humidity 70 1440 > th dose independent rect. 11 1
458 849.35 radiation 1 10 > th dose independent rect. 5 11
497 849.91 radiation 1 10 < th dose independent rect. 1 17
504 850.14 radiation 1 10 > th dose independent no NA NA
505 850.14 radiation 1 10 < th dose independent no NA NA
542 850.14 radiation 1 10 < th dose independent rect. 11 21
567 850.14 radiation 1 10 < th dose independent rect. 13 23
568 850.14 radiation 1 10 < th dose independent rect. 15 23
580 850.46 wind 1 90 > th dose independent rect. 1 8
582 850.50 radiation 10 30 > th dose independent rect. 9 9
638 851.49 humidity 80 1440 < th dose independent sin 4 NA
645 851.58 radiation 10 10 < th dose dependent rect. 6 8
667 852.30 temperature 20 270 > th dose independent rect. 23 10
668 852.33 humidity 50 1440 > th dose dependent rect. 9 5
689 852.89 humidity 70 1440 < th dose independent rect. 18 18
709 853.07 radiation 20 10 < th dose independent rect. 1 19
719 853.24 humidity 80 1440 > th dose independent sin 4 NA
726 853.41 humidity 70 720 > th dose independent rect. 15 18
728 853.42 humidity 70 720 > th dose independent rect. 13 15
731 853.57 radiation 1 10 < th dose independent rect. 17 23
732 853.58 humidity 70 720 > th dose independent rect. 13 20
753 853.76 humidity 80 270 > th dose independent rect. 23 17
755 853.79 wind 1 90 > th dose independent rect. 1 19
859 854.41 radiation 30 10 < th dose dependent rect. 1 10
860 854.42 radiation 20 10 < th dose dependent rect. 3 23
879 854.54 radiation 10 10 > th dose independent rect. 11 23
993 855.28 temperature 20 720 > th dose independent rect. 21 12
996 855.31 temperature 20 720 > th dose independent rect. 21 10