Os05g0343200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0343200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 297.62 | 0.811 | 3.87 | 0.144 | 1.1 | -0.459 | -1.26 | -2.29 | 0.16 | 21.4 | 3.281 | 686 | -- | -- |
| 302.81 | 0.81 | 3.85 | 0.167 | 1.02 | -0.781 | -0.899 | -- | 0.0951 | 21.5 | 2.137 | 685 | -- | -- |
| 301.64 | 0.809 | 3.85 | 0.203 | 1.04 | -0.616 | -- | -1.25 | 0.154 | 21.5 | 2.843 | 688 | -- | -- |
| 303.72 | 0.812 | 3.84 | 0.207 | 1.01 | -0.764 | -- | -- | 0.126 | 21.6 | 2.435 | 685 | -- | -- |
| 337.17 | 0.855 | 3.83 | 0.464 | -- | -1.71 | -- | -0.811 | 0.103 | -- | 4.873 | 667 | -- | -- |
| 311.73 | 0.828 | 3.82 | -0.0171 | 1.25 | -- | -0.6 | -- | 0.23 | 21.4 | -- | -- | -- | -- |
| 313.03 | 0.829 | 3.82 | 0.0042 | 1.25 | -- | -- | -- | 0.231 | 21.4 | -- | -- | -- | -- |
| 337.54 | 0.856 | 3.82 | 0.446 | -- | -1.68 | -- | -- | 0.089 | -- | 4.418 | 668 | -- | -- |
| 304.69 | 0.813 | 3.84 | -- | 1.03 | -0.687 | -- | -- | 0.113 | 21.6 | 2.443 | 685 | -- | -- |
| 405.22 | 0.941 | 3.79 | 0.0116 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 313.03 | 0.828 | 3.82 | -- | 1.25 | -- | -- | -- | 0.23 | 21.4 | -- | -- | -- | -- |
| 342.52 | 0.862 | 3.83 | -- | -- | -1.58 | -- | -- | 0.0484 | -- | 4.283 | 677 | -- | -- |
| 405.23 | 0.94 | 3.79 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 295.85 | wind | 1 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 7 | 296.49 | wind | 5 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 8 | 296.50 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 16 | 296.67 | wind | 1 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 19 | 296.74 | wind | 3 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 22 | 296.81 | wind | 1 | 720 | > th | dose independent | rect. | 20 | 13 |
| 26 | 296.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 29 | 296.94 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 39 | 297.06 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 43 | 297.09 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 62 | 297.24 | wind | 5 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 74 | 297.31 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 84 | 297.41 | wind | 1 | 720 | > th | dose independent | rect. | 11 | 22 |
| 88 | 297.42 | wind | 1 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 104 | 297.49 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 18 | 9 |
| 132 | 297.67 | wind | 1 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 134 | 297.68 | wind | 9 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 137 | 297.69 | wind | 3 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 152 | 297.74 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 9 |
| 166 | 297.82 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 178 | 297.86 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 181 | 297.87 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 186 | 297.89 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 12 | NA |
| 200 | 297.92 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 10 | NA |
| 238 | 298.06 | wind | 3 | 720 | < th | dose dependent | no | NA | NA |
| 246 | 298.09 | wind | 7 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 255 | 298.12 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 256 | 298.15 | wind | 3 | 720 | < th | dose independent | rect. | 22 | 20 |
| 264 | 298.16 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 287 | 298.24 | wind | 7 | 720 | > th | dose independent | rect. | 20 | 1 |
| 291 | 298.24 | wind | 3 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 298 | 298.27 | wind | 1 | 720 | > th | dose independent | rect. | 13 | 20 |
| 320 | 298.33 | wind | 3 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 324 | 298.34 | wind | 3 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 337 | 298.37 | wind | 3 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 338 | 298.38 | wind | 1 | 720 | > th | dose dependent | sin | 11 | NA |
| 342 | 298.39 | wind | 1 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 348 | 298.40 | radiation | 10 | 30 | < th | dose independent | rect. | 8 | 10 |
| 360 | 298.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 370 | 298.45 | wind | 1 | 10 | > th | dose dependent | sin | 11 | NA |
| 407 | 298.56 | wind | 9 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 408 | 298.57 | wind | 7 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 414 | 298.59 | radiation | 20 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 429 | 298.62 | wind | 1 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 430 | 298.62 | wind | 1 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 431 | 298.63 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 440 | 298.64 | wind | 3 | 720 | > th | dose independent | rect. | 20 | 22 |
| 456 | 298.67 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 12 |
| 463 | 298.68 | wind | 1 | 720 | > th | dose dependent | no | NA | NA |
| 476 | 298.71 | wind | 1 | 10 | > th | dose dependent | rect. | 21 | 12 |
| 481 | 298.73 | wind | 3 | 720 | > th | dose independent | rect. | 9 | 19 |
| 535 | 298.82 | wind | 7 | 720 | > th | dose independent | rect. | 17 | 9 |
| 546 | 298.84 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 17 | NA |
| 559 | 298.87 | wind | 7 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 634 | 299.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 645 | 299.01 | wind | 1 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 660 | 299.04 | wind | 7 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 663 | 299.04 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 695 | 299.12 | wind | 5 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 697 | 299.12 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 709 | 299.15 | wind | 3 | 720 | < th | dose independent | rect. | 8 | 22 |
| 717 | 299.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 16 | 10 |
| 723 | 299.17 | wind | 5 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 753 | 299.23 | wind | 5 | 720 | > th | dose dependent | sin | 12 | NA |
| 760 | 299.24 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 761 | 299.24 | wind | 1 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 772 | 299.27 | wind | 7 | 720 | > th | dose independent | rect. | 17 | 16 |
| 809 | 299.35 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 838 | 299.41 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 844 | 299.42 | wind | 5 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 845 | 299.42 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 875 | 299.47 | wind | 3 | 720 | < th | dose independent | no | NA | NA |
| 894 | 299.50 | wind | 3 | 720 | < th | dose independent | rect. | 4 | 23 |
| 903 | 299.52 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 907 | 299.52 | wind | 1 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 922 | 299.55 | wind | 3 | 270 | < th | dose independent | rect. | 9 | 19 |
| 925 | 299.55 | wind | 5 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 926 | 299.55 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 9 |
| 974 | 299.63 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 987 | 299.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 1 |