Os05g0341300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to G protein alpha subunit.
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Os05g0341300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to G protein alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.33 | 0.498 | 6.36 | -2.17 | 0.344 | 0.526 | 0.0724 | 1.88 | -0.372 | 1.58 | 1014 | 7283 | -- | -- |
| 122.83 | 0.516 | 6.42 | -2.52 | 0.358 | 0.596 | 0.0508 | -- | -0.5 | 1.59 | 1014 | 4986 | -- | -- |
| 112.35 | 0.494 | 6.36 | -2.17 | 0.344 | 0.525 | -- | 1.87 | -0.372 | 1.52 | 1014 | 7283 | -- | -- |
| 122.7 | 0.516 | 6.43 | -2.56 | 0.341 | 0.575 | -- | -- | -0.487 | 1.44 | 1014 | 5003 | -- | -- |
| 119.6 | 0.509 | 6.36 | -2.15 | -- | 0.529 | -- | 1.88 | -0.37 | -- | 1014 | 7283 | -- | -- |
| 134.93 | 0.545 | 6.41 | -2.51 | 0.348 | -- | 0.00407 | -- | -0.393 | 1.57 | -- | -- | -- | -- |
| 134.93 | 0.544 | 6.41 | -2.51 | 0.348 | -- | -- | -- | -0.394 | 1.57 | -- | -- | -- | -- |
| 129.87 | 0.531 | 6.42 | -2.55 | -- | 0.579 | -- | -- | -0.481 | -- | 1014 | 5018 | -- | -- |
| 290.83 | 0.794 | 6.4 | -- | 0.287 | 0.632 | -- | -- | -0.234 | 0.214 | 1014 | 4137 | -- | -- |
| 142.35 | 0.557 | 6.4 | -2.49 | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
| 300.48 | 0.811 | 6.34 | -- | 0.304 | -- | -- | -- | -0.114 | 1.3 | -- | -- | -- | -- |
| 295.17 | 0.8 | 6.36 | -- | -- | 0.625 | -- | -- | -0.187 | -- | 1014 | 4120 | -- | -- |
| 306.19 | 0.817 | 6.34 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 2 | 108.79 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 3 | 108.79 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 4 | 108.89 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 5 | 108.89 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 6 | 108.89 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 14 | 109.33 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 15 | 109.42 | wind | 7.0 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 17 | 109.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 23 | 109.68 | wind | 7.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 58 | 112.23 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 81 | 112.53 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 82 | 112.63 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 92 | 113.12 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 94 | 113.21 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 96 | 113.22 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 99 | 113.23 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 143 | 113.57 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 150 | 113.59 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 7 |
| 170 | 113.64 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 173 | 113.64 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 176 | 113.66 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 194 | 113.68 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 240 | 113.72 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 262 | 113.81 | wind | 5.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 290 | 114.32 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 297 | 114.36 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 311 | 114.40 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 323 | 114.51 | wind | 5.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 347 | 114.84 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 361 | 114.90 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 368 | 114.95 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 377 | 114.98 | humidity | 50.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 429 | 115.14 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 3 | 17 |
| 483 | 115.29 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 596 | 115.62 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 685 | 115.81 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 2 | 16 |
| 839 | 116.09 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 22 |
| 845 | 116.12 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 18 |
| 853 | 116.13 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 878 | 116.16 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 884 | 116.17 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 893 | 116.17 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 982 | 116.32 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 22 |
| 995 | 116.34 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 22 |