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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0339300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0336) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.89 (0.303) R2dE : 0.168 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.149 (0.0708) R2dN8 : 0.0105 R2N8 : 0.00343
σ : 0.63
deviance : 183.12
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.13
memory length : 585
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 4.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.2 0.625 3.05 -0.00635 0.123 10.3 -0.364 22.1 0.119 6.62 1.621 585 11.3 4.5
212.95 0.685 2.95 -0.462 0.0391 0.882 0.0219 -- 0.0603 0.317 1.621 585 11.3 4.5
177.37 0.62 3.06 0.00236 0.117 10.3 -- 22.7 0.115 6.26 1.591 604 11.3 4.46
181.85 0.628 2.95 -0.387 0.0401 2.71 -- -- 0.0818 0.0195 2.339 581 10.9 4.35
178.02 0.621 3.07 0.00375 -- 10.4 -- 23 0.117 -- 1.559 609 11.3 4.42
213.89 0.686 2.95 -0.478 0.0201 -- 0.128 -- 0.0551 2.92 -- -- -- --
213.91 0.685 2.96 -0.481 0.0301 -- -- -- 0.0546 23.4 -- -- -- --
181.43 0.627 2.96 -0.294 -- 2.82 -- -- 0.0901 -- 2.325 578 11 4.29
183.24 0.63 2.96 -- 0.0471 3.02 -- -- 0.0961 4.52 2.366 581 10.9 4.35
213.97 0.684 2.95 -0.48 -- -- -- -- 0.0549 -- -- -- -- --
220.01 0.694 2.94 -- 0.0263 -- -- -- 0.108 22.2 -- -- -- --
183.12 0.63 2.94 -- -- 2.89 -- -- 0.149 -- 2.13 585 11.2 4.13
220.05 0.692 2.94 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.63 radiation 1 720 < th dose independent rect. 10 3
2 181.63 radiation 1 720 < th dose dependent rect. 10 3
9 182.21 radiation 1 270 < th dose dependent rect. 13 3
14 182.49 humidity 90 720 > th dose independent rect. 12 1
16 182.49 humidity 90 720 > th dose dependent rect. 12 1
82 189.69 radiation 1 30 < th dose dependent rect. 13 3
107 190.53 radiation 1 720 > th dose independent rect. 14 1
115 191.06 radiation 1 30 < th dose dependent rect. 15 1
180 194.15 radiation 1 1440 > th dose independent rect. 8 7
229 195.74 radiation 1 1440 > th dose independent rect. 9 3
244 195.82 radiation 1 1440 > th dose independent rect. 9 1
287 196.79 radiation 1 1440 > th dose independent rect. 11 1
298 197.15 radiation 1 10 < th dose dependent rect. 6 11
304 197.34 radiation 1 270 < th dose dependent rect. 11 18
307 197.47 radiation 1 270 < th dose independent rect. 11 18
333 198.08 temperature 25 720 > th dose independent rect. 14 1
348 198.31 radiation 1 14400 < th dose dependent rect. 9 7
375 198.66 radiation 1 14400 > th dose independent rect. 9 6
377 198.71 radiation 1 14400 < th dose independent rect. 9 6
387 198.86 wind 9 10 > th dose dependent rect. 17 1
439 199.41 radiation 1 1440 > th dose independent rect. 4 1
451 199.41 radiation 1 1440 > th dose dependent rect. 4 1
507 199.93 radiation 1 720 > th dose dependent rect. 14 1
524 200.07 humidity 90 90 > th dose independent rect. 14 1
527 200.07 humidity 90 90 > th dose dependent rect. 14 1
577 200.43 temperature 25 270 < th dose independent rect. 13 2
607 200.71 radiation 10 720 > th dose independent rect. 11 22
608 200.71 radiation 10 720 < th dose dependent rect. 11 10
613 200.75 radiation 1 720 < th dose independent rect. 11 10
650 201.03 temperature 25 90 < th dose dependent rect. 14 1
701 201.37 radiation 20 720 < th dose independent rect. 11 3
765 201.85 radiation 1 720 < th dose dependent rect. 1 16
776 201.91 humidity 80 720 < th dose independent rect. 12 3
792 202.04 humidity 90 1440 < th dose independent rect. 1 2
800 202.05 radiation 1 270 < th dose dependent rect. 6 23
811 202.12 atmosphere 1015 43200 > th dose independent rect. 14 2
836 202.18 wind 9 10 < th dose dependent rect. 14 12
841 202.22 radiation 20 720 < th dose independent rect. 12 1
843 202.23 radiation 1 720 > th dose independent rect. 12 18
865 202.32 radiation 1 720 < th dose independent sin 22 NA
871 202.33 radiation 1 720 < th dose independent rect. 1 16
876 202.36 radiation 1 720 > th dose independent sin 23 NA
880 202.36 humidity 80 270 > th dose independent rect. 12 16
890 202.40 wind 7 720 < th dose independent rect. 14 1
921 202.53 radiation 1 270 < th dose independent rect. 6 23
928 202.54 radiation 1 720 < th dose dependent sin 23 NA
952 202.61 radiation 1 720 < th dose dependent rect. 19 22
982 202.68 radiation 10 1440 < th dose dependent rect. 4 1
990 202.70 atmosphere 1015 43200 < th dose independent rect. 15 5
992 202.70 radiation 10 1440 < th dose dependent rect. 19 10
994 202.71 radiation 20 720 < th dose independent rect. 11 10