Os05g0338900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0338900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 304.63 | 0.82 | 6.3 | 1.21 | 0.451 | -0.568 | 1.27 | 4.64 | 0.887 | 1.29 | 91.43 | 328 | -- | -- |
| 326.46 | 0.842 | 6.34 | 1.36 | 0.447 | -0.698 | 2.25 | -- | 0.861 | 3.61 | 83.91 | 545 | -- | -- |
| 307.94 | 0.817 | 6.28 | 1.18 | 0.444 | -0.429 | -- | 4.74 | 0.925 | 1.44 | 90 | 244 | -- | -- |
| 344.03 | 0.864 | 6.33 | 1.36 | 0.526 | -0.613 | -- | -- | 0.907 | 3.58 | 81.8 | 540 | -- | -- |
| 318.57 | 0.831 | 6.27 | 1.17 | -- | -0.217 | -- | 4.86 | 0.939 | -- | 90 | 238 | -- | -- |
| 337.4 | 0.861 | 6.31 | 1.36 | 0.402 | -- | 2.04 | -- | 1 | 2.49 | -- | -- | -- | -- |
| 350.87 | 0.877 | 6.32 | 1.31 | 0.425 | -- | -- | -- | 0.989 | 0.969 | -- | -- | -- | -- |
| 342.68 | 0.862 | 6.32 | 1.27 | -- | -0.975 | -- | -- | 0.965 | -- | 43.59 | 1097 | -- | -- |
| 385.99 | 0.915 | 6.35 | -- | 0.000316 | -1.12 | -- | -- | 0.805 | 17.9 | 52 | 1087 | -- | -- |
| 362.11 | 0.889 | 6.31 | 1.33 | -- | -- | -- | -- | 0.998 | -- | -- | -- | -- | -- |
| 396.26 | 0.931 | 6.35 | -- | 0.447 | -- | -- | -- | 0.843 | 1.09 | -- | -- | -- | -- |
| 384.61 | 0.913 | 6.35 | -- | -- | -1.1 | -- | -- | 0.821 | -- | 28.32 | 1103 | -- | -- |
| 408.64 | 0.944 | 6.34 | -- | -- | -- | -- | -- | 0.85 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 299.13 | humidity | 90 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 14 | 303.61 | humidity | 90 | 270 | > th | dose dependent | sin | 3 | NA |
| 23 | 304.80 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 31 | 305.31 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 51 | 305.59 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 54 | 305.71 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 63 | 305.75 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 73 | 305.81 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 87 | 306.23 | humidity | 90 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 88 | 306.26 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 93 | 306.46 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 103 | 306.61 | humidity | 90 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 126 | 306.94 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 135 | 307.20 | humidity | 90 | 270 | > th | dose independent | sin | 4 | NA |
| 151 | 307.53 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 181 | 308.33 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 16 |
| 183 | 308.35 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 12 |
| 197 | 308.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 205 | 308.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 209 | 308.59 | humidity | 90 | 270 | > th | dose independent | rect. | 22 | 19 |
| 254 | 309.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 267 | 309.09 | humidity | 90 | 270 | > th | dose independent | rect. | 22 | 15 |
| 274 | 309.14 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 2 |
| 275 | 309.14 | humidity | 90 | 30 | > th | dose independent | rect. | 4 | 8 |
| 285 | 309.30 | humidity | 70 | 10 | > th | dose dependent | rect. | 4 | 9 |
| 301 | 309.36 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 303 | 309.37 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 309 | 309.49 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 336 | 309.66 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 337 | 309.68 | humidity | 90 | 270 | > th | dose independent | rect. | 3 | 14 |
| 352 | 309.88 | humidity | 90 | 270 | > th | dose independent | rect. | 3 | 11 |
| 361 | 309.98 | humidity | 90 | 30 | > th | dose independent | rect. | 4 | 12 |
| 375 | 310.06 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 520 | 310.97 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 523 | 310.98 | humidity | 90 | 270 | > th | dose independent | rect. | 3 | 21 |
| 524 | 310.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 537 | 311.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 613 | 311.44 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 22 |
| 645 | 311.69 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 724 | 312.05 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 22 |
| 741 | 312.13 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 746 | 312.17 | humidity | 90 | 270 | < th | dose independent | sin | 3 | NA |
| 768 | 312.24 | humidity | 90 | 270 | > th | dose independent | rect. | 16 | 21 |
| 820 | 312.43 | humidity | 90 | 270 | > th | dose independent | no | NA | NA |
| 843 | 312.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 862 | 312.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 970 | 313.09 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 9 |
| 971 | 313.09 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 977 | 313.12 | humidity | 90 | 30 | > th | dose independent | rect. | 5 | 21 |
| 987 | 313.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 3 |