Os05g0335800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os05g0335800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.19 | 0.589 | 9.59 | 3.01 | 2.51 | -3.08 | -0.366 | -0.0123 | 1.13 | 4.92 | 22.19 | 1711 | -- | -- |
| 157.19 | 0.584 | 9.59 | 3.02 | 2.51 | -3.08 | -0.364 | -- | 1.13 | 4.92 | 22.22 | 1713 | -- | -- |
| 157.49 | 0.584 | 9.59 | 3.04 | 2.52 | -3.07 | -- | 0.0869 | 1.13 | 4.93 | 22.26 | 1694 | -- | -- |
| 157.5 | 0.585 | 9.59 | 3.01 | 2.52 | -3.06 | -- | -- | 1.12 | 4.93 | 22.24 | 1694 | -- | -- |
| 205.89 | 0.668 | 9.56 | 3.33 | -- | -4.99 | -- | 1.64 | 1.38 | -- | 21.51 | 323 | -- | -- |
| 468.1 | 1.01 | 9.74 | 1.94 | 2.66 | -- | -0.532 | -- | 0.454 | 5.12 | -- | -- | -- | -- |
| 468.81 | 1.01 | 9.74 | 1.94 | 2.66 | -- | -- | -- | 0.456 | 5.11 | -- | -- | -- | -- |
| 209.51 | 0.674 | 9.59 | 3.04 | -- | -4.84 | -- | -- | 1.3 | -- | 21.4 | 325 | -- | -- |
| 375.65 | 0.903 | 9.71 | -- | 2.75 | -2.17 | -- | -- | 0.624 | 4.99 | 22.8 | 1538 | -- | -- |
| 839.85 | 1.35 | 9.77 | 2.04 | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
| 568.27 | 1.12 | 9.79 | -- | 2.69 | -- | -- | -- | 0.24 | 5.08 | -- | -- | -- | -- |
| 439.47 | 0.976 | 9.7 | -- | -- | -4.2 | -- | -- | 0.809 | -- | 22.57 | 314 | -- | -- |
| 949.34 | 1.44 | 9.82 | -- | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 5 | 165.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 9 | 165.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 27 | 165.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 35 | 165.89 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 39 | 165.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 105 | 167.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 110 | 167.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 119 | 167.83 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 126 | 168.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 161 | 169.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 190 | 170.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 193 | 170.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 210 | 170.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 223 | 171.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 260 | 171.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 264 | 172.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 267 | 172.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 291 | 172.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 365 | 174.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 373 | 175.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 600 | 177.07 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 766 | 178.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 925 | 179.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |