Os05g0334800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0334800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.31 | 0.291 | 10.6 | -0.49 | 0.599 | 1 | 0.264 | 0.0311 | -0.234 | 21.2 | 22.9 | 1249 | -- | -- |
| 38.32 | 0.288 | 10.6 | -0.486 | 0.6 | 0.997 | 0.259 | -- | -0.233 | 21.2 | 22.9 | 1243 | -- | -- |
| 38.54 | 0.289 | 10.6 | -0.493 | 0.604 | 0.993 | -- | -0.000508 | -0.233 | 21.1 | 22.9 | 1222 | -- | -- |
| 38.54 | 0.289 | 10.6 | -0.497 | 0.604 | 0.988 | -- | -- | -0.235 | 21.1 | 22.9 | 1222 | -- | -- |
| 58.07 | 0.355 | 10.6 | -0.495 | -- | 1.08 | -- | 0.153 | -0.242 | -- | 22.4 | 1465 | -- | -- |
| 49.2 | 0.329 | 10.7 | -0.765 | 0.583 | -- | 0.203 | -- | -0.392 | 20.8 | -- | -- | -- | -- |
| 49.32 | 0.329 | 10.7 | -0.772 | 0.584 | -- | -- | -- | -0.392 | 20.8 | -- | -- | -- | -- |
| 58.06 | 0.355 | 10.6 | -0.485 | -- | 1.03 | -- | -- | -0.241 | -- | 22.6 | 1461 | -- | -- |
| 41.99 | 0.302 | 10.6 | -- | 0.61 | 1.13 | -- | -- | -0.144 | 21.1 | 21.8 | 2529 | -- | -- |
| 68.63 | 0.387 | 10.6 | -0.773 | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
| 65.02 | 0.377 | 10.6 | -- | 0.586 | -- | -- | -- | -0.306 | 20.7 | -- | -- | -- | -- |
| 61.58 | 0.365 | 10.6 | -- | -- | 1.18 | -- | -- | -0.166 | -- | 21.34 | 2848 | -- | -- |
| 84.38 | 0.429 | 10.6 | -- | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 2 | 37.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 5 | 37.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 6 | 37.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 11 | 37.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 16 | 37.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 65 | 37.78 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 71 | 37.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 84 | 37.83 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 118 | 37.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 134 | 37.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 148 | 37.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 417 | 38.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 947 | 39.14 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 962 | 39.16 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |