FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0331800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0179) R2 : 0.0196
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.114 (0.0377) R2dN8 : 0.0253 R2N8 : 0.0196
σ : 0.337
deviance : 52.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.36 0.327 3.24 0.216 0.126 0.469 0.152 1.87 -0.146 6.78 5.1 4550 -- --
49.55 0.328 3.2 0.307 0.134 0.468 0.121 -- -0.101 7.59 4.699 10365 -- --
48.42 0.324 3.24 0.218 0.126 0.465 -- 1.85 -0.146 6.83 5.084 4550 -- --
49.39 0.327 3.19 0.311 0.133 0.413 -- -- -0.0792 7.63 4.669 10684 -- --
49.13 0.326 3.24 0.202 -- 0.45 -- 1.88 -0.139 -- 5.047 4389 -- --
51.08 0.335 3.19 0.128 0.11 -- 0.099 -- -0.101 7.71 -- -- -- --
51.11 0.335 3.19 0.13 0.111 -- -- -- -0.101 7.69 -- -- -- --
50.17 0.33 3.19 0.314 -- 0.351 -- -- -0.0694 -- 4.8 11404 -- --
51.14 0.333 3.19 -- 0.112 0.16 -- -- -0.104 7.46 5.2 10764 -- --
51.76 0.336 3.19 0.131 -- -- -- -- -0.0994 -- -- -- -- --
51.55 0.336 3.2 -- 0.112 -- -- -- -0.115 7.61 -- -- -- --
51.83 0.335 3.2 -- -- 0.16 -- -- -0.102 -- 5.2 10114 -- --
52.22 0.337 3.2 -- -- -- -- -- -0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.28 atmosphere 1000.0 10 < th dose independent rect. 1 1
8 41.28 atmosphere 1000.0 10 < th dose dependent rect. 1 1
31 45.16 wind 3.0 90 < th dose independent rect. 1 1
36 45.80 temperature 15.0 10 > th dose dependent rect. 1 1
40 45.88 wind 1.0 10 > th dose independent rect. 1 2
41 45.88 atmosphere 1015.0 10 < th dose dependent rect. 1 2
44 45.93 atmosphere 1015.0 90 < th dose dependent rect. 1 1
61 46.16 wind 5.0 30 < th dose dependent rect. 1 1
62 46.17 wind 1.0 90 > th dose independent rect. 1 1
107 46.56 humidity 50.0 90 > th dose dependent rect. 1 1
110 46.59 humidity 80.0 90 > th dose independent rect. 1 1
115 46.64 precipitation 0.1 90 < th dose independent rect. 1 1
116 46.64 precipitation 0.1 90 < th dose dependent rect. 1 1
117 46.65 humidity 80.0 10 > th dose independent rect. 1 1
120 46.67 humidity 50.0 10 > th dose dependent rect. 1 1
122 46.68 precipitation 0.1 10 < th dose independent rect. 1 1
124 46.68 precipitation 0.1 10 < th dose dependent rect. 1 1
141 46.72 temperature 10.0 90 > th dose independent rect. 1 1
143 46.72 temperature 30.0 90 < th dose independent rect. 1 1
144 46.72 humidity 50.0 90 > th dose independent rect. 1 1
147 46.72 atmosphere 995.0 90 > th dose independent rect. 1 1
148 46.72 atmosphere 1010.0 90 < th dose independent rect. 1 1
150 46.72 radiation 1.0 90 < th dose independent rect. 1 1
155 46.72 temperature 10.0 90 > th dose independent rect. 2 23
156 46.72 atmosphere 995.0 30 > th dose independent rect. 2 23
157 46.72 radiation 1.0 90 < th dose dependent rect. 1 1
184 46.80 temperature 10.0 10 > th dose independent rect. 1 1
186 46.80 temperature 30.0 10 < th dose independent rect. 1 1
187 46.80 humidity 50.0 10 > th dose independent rect. 1 1
190 46.80 atmosphere 995.0 10 > th dose independent rect. 1 1
191 46.80 atmosphere 1010.0 10 < th dose independent rect. 1 1
193 46.80 radiation 1.0 10 < th dose independent rect. 1 1
200 46.80 temperature 10.0 10 > th dose independent rect. 2 23
201 46.80 radiation 1.0 10 < th dose dependent rect. 1 1
206 46.81 wind 9.0 1440 < th dose independent rect. 2 1
211 46.81 temperature 10.0 1440 > th dose independent rect. 2 1
215 46.81 temperature 30.0 1440 < th dose independent rect. 2 1
222 46.81 humidity 50.0 1440 > th dose independent rect. 2 1
233 46.81 atmosphere 995.0 1440 > th dose independent rect. 2 1
241 46.81 radiation 1.0 1440 < th dose independent rect. 2 1
264 46.81 temperature 10.0 1440 > th dose independent rect. 3 23
272 46.81 radiation 1.0 1440 < th dose dependent rect. 2 1
294 46.82 wind 9.0 90 < th dose independent rect. 2 23
398 46.97 radiation 40.0 90 < th dose independent rect. 12 14
438 47.12 atmosphere 1015.0 1440 < th dose independent rect. 2 1
596 47.32 wind 9.0 30 < th dose dependent rect. 3 9
615 47.34 wind 9.0 30 < th dose independent rect. 12 15
623 47.35 wind 9.0 30 < th dose independent rect. 3 9
624 47.35 temperature 15.0 30 > th dose independent rect. 12 15
625 47.36 temperature 10.0 30 > th dose independent rect. 3 9
627 47.36 atmosphere 995.0 30 > th dose independent rect. 3 9
628 47.36 atmosphere 1015.0 30 < th dose independent rect. 3 9
634 47.37 wind 5.0 14400 < th dose independent rect. 9 6
637 47.37 precipitation 0.1 30 < th dose independent rect. 2 23
638 47.37 precipitation 0.1 30 < th dose dependent rect. 2 23
650 47.40 atmosphere 1015.0 10 < th dose independent rect. 3 22
654 47.41 wind 5.0 14400 > th dose independent rect. 9 6
655 47.41 atmosphere 1015.0 90 < th dose independent rect. 2 22
660 47.43 radiation 1.0 90 < th dose dependent rect. 2 22
668 47.45 wind 5.0 14400 < th dose independent rect. 11 2
672 47.45 radiation 1.0 90 < th dose independent rect. 2 22
681 47.50 humidity 80.0 14400 < th dose dependent rect. 21 12
687 47.53 precipitation 0.1 30 < th dose independent rect. 3 9
690 47.53 precipitation 0.1 30 < th dose dependent rect. 3 9
693 47.54 radiation 40.0 90 < th dose independent rect. 2 10
700 47.55 wind 3.0 14400 > th dose dependent rect. 8 7
704 47.57 precipitation 0.1 10 < th dose independent rect. 12 15
705 47.57 wind 3.0 14400 > th dose dependent rect. 11 1
707 47.57 precipitation 0.1 10 < th dose dependent rect. 12 15
712 47.59 wind 5.0 14400 > th dose independent rect. 11 2
742 47.65 wind 9.0 10 < th dose dependent rect. 12 15
762 47.70 temperature 10.0 1440 > th dose independent rect. 3 10
765 47.70 atmosphere 995.0 1440 > th dose independent rect. 3 10
768 47.70 temperature 10.0 1440 > th dose independent rect. 13 14
773 47.70 wind 7.0 14400 < th dose dependent rect. 11 1
818 47.79 radiation 40.0 10 < th dose independent rect. 3 22
872 47.84 radiation 40.0 90 < th dose independent rect. 2 22
892 47.87 wind 5.0 14400 < th dose independent sin 1 NA
895 47.87 wind 5.0 14400 > th dose independent rect. 24 17
899 47.88 wind 5.0 14400 < th dose independent rect. 24 17
957 47.90 wind 5.0 14400 > th dose independent sin 1 NA
991 47.92 temperature 10.0 10 > th dose dependent rect. 3 9
993 47.93 radiation 40.0 10 < th dose independent rect. 3 9