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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0329200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prolamin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0296) R2 : 0.333
β1 : -1.08 (0.108) R2dD : 0.153 R2D : 0.143
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.94 (0.458) R2dE : 0.384 R2E : -0.0884
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.82 (1.16) R2dD*E : 0.192 R2D*E : -0.181
γ1 : 0.223 (0.0628) R2dN8 : 0.0247 R2N8 : 0.0361
σ : 0.55
deviance : 139.39
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8711
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 10.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.08 0.55 3.25 -1.09 0.196 5.05 0.0557 -8.8 0.221 11.3 0.8781 12 17 10
154.42 0.579 3.23 -1.1 0.195 2.48 0.357 -- 0.212 11.5 0.8352 13 17.3 10.1
137.09 0.545 3.25 -1.09 0.195 5.04 -- -8.83 0.221 11.2 0.8781 12 17 10.1
154.92 0.58 3.23 -1.09 0.195 2.4 -- -- 0.213 10.8 0.8396 13 17.3 10.1
139.39 0.55 3.25 -1.08 -- 4.94 -- -8.82 0.223 -- 0.8711 11 17 10.1
174.06 0.619 3.23 -0.972 0.109 -- -0.355 -- 0.217 7.52 -- -- -- --
174.29 0.618 3.23 -0.979 0.114 -- -- -- 0.219 9.04 -- -- -- --
156.79 0.583 3.23 -1.08 -- 2.28 -- -- 0.212 -- 1.01 11 19.3 8.46
185.01 0.633 3.2 -- 0.203 2.15 -- -- 0.337 10.9 1.026 11 17.1 10.8
175.04 0.618 3.23 -0.979 -- -- -- -- 0.22 -- -- -- -- --
199.54 0.661 3.2 -- 0.115 -- -- -- 0.328 9.68 -- -- -- --
187.14 0.637 3.21 -- -- 1.92 -- -- 0.33 -- 1.023 11 19.3 8.51
200.32 0.661 3.21 -- -- -- -- -- 0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.94 wind 1.0 10 < th dose dependent rect. 17 10
5 137.95 wind 1.0 10 < th dose dependent rect. 21 6
9 138.16 wind 1.0 10 < th dose dependent rect. 23 4
22 139.48 wind 1.0 10 < th dose dependent rect. 8 19
36 140.17 wind 7.0 1440 > th dose independent rect. 3 1
37 140.17 wind 7.0 1440 > th dose dependent rect. 3 1
48 140.37 wind 1.0 270 < th dose dependent rect. 22 1
54 141.64 wind 1.0 270 < th dose independent rect. 22 1
76 145.53 wind 1.0 10 < th dose independent rect. 15 11
77 145.54 wind 1.0 10 < th dose independent rect. 17 9
79 145.56 wind 1.0 10 < th dose independent rect. 21 5
87 145.65 wind 1.0 10 < th dose independent rect. 23 3
120 148.93 wind 1.0 10 < th dose dependent sin 17 NA
132 151.71 temperature 20.0 90 < th dose independent rect. 6 1
138 152.10 wind 1.0 270 < th dose dependent rect. 17 6
144 152.42 temperature 20.0 90 < th dose dependent rect. 6 1
180 153.46 wind 3.0 1440 < th dose dependent rect. 3 2
206 154.86 radiation 1.0 1440 > th dose independent rect. 4 3
216 154.87 radiation 1.0 1440 < th dose independent rect. 24 7
218 154.90 radiation 1.0 1440 < th dose independent rect. 22 9
229 154.99 temperature 20.0 14400 > th dose independent rect. 14 5
248 155.25 wind 1.0 14400 < th dose dependent rect. 3 2
251 155.28 temperature 20.0 14400 < th dose dependent rect. 15 6
257 155.38 temperature 20.0 14400 < th dose independent rect. 14 5
258 155.39 temperature 20.0 14400 > th dose independent sin 23 NA
260 155.40 temperature 20.0 14400 > th dose independent rect. 8 12
262 155.42 temperature 20.0 14400 > th dose independent rect. 6 14
265 155.45 wind 1.0 14400 > th dose independent rect. 3 2
267 155.46 temperature 20.0 14400 < th dose independent sin 22 NA
278 155.51 wind 1.0 14400 < th dose independent rect. 3 2
283 155.55 temperature 20.0 14400 < th dose independent rect. 8 12
284 155.55 temperature 20.0 14400 < th dose independent rect. 6 15
285 155.55 radiation 1.0 30 < th dose dependent rect. 7 1
294 155.58 temperature 20.0 14400 < th dose independent rect. 10 10
315 155.66 temperature 20.0 14400 > th dose independent rect. 8 1
316 155.67 wind 3.0 1440 < th dose independent rect. 3 1
319 155.69 temperature 20.0 14400 < th dose independent rect. 8 1
364 155.89 wind 1.0 1440 > th dose dependent rect. 3 1
365 155.89 wind 1.0 14400 < th dose dependent rect. 3 4
380 155.97 wind 1.0 14400 > th dose independent rect. 3 4
385 155.99 wind 3.0 1440 > th dose independent rect. 3 1
393 156.02 temperature 20.0 14400 < th dose dependent rect. 8 14
396 156.04 temperature 15.0 14400 > th dose independent rect. 5 3
403 156.06 precipitation 0.1 43200 < th dose independent rect. 10 3
406 156.06 precipitation 0.1 43200 < th dose dependent rect. 10 3
414 156.08 temperature 20.0 14400 < th dose dependent rect. 6 16
416 156.10 wind 3.0 14400 < th dose dependent rect. 5 1
426 156.13 temperature 15.0 14400 > th dose independent rect. 6 1
427 156.13 wind 1.0 14400 > th dose independent rect. 24 7
439 156.16 temperature 20.0 14400 < th dose dependent sin 21 NA
447 156.20 wind 1.0 14400 > th dose independent rect. 1 4
464 156.24 temperature 20.0 90 > th dose dependent rect. 3 6
486 156.29 precipitation 0.1 43200 > th dose independent rect. 10 3
491 156.29 precipitation 0.1 43200 > th dose dependent rect. 10 3
514 156.35 precipitation 0.1 43200 < th dose independent rect. 12 1
516 156.35 precipitation 0.1 43200 < th dose dependent rect. 12 1
612 156.58 temperature 25.0 14400 < th dose dependent rect. 12 1
617 156.60 wind 1.0 14400 < th dose independent rect. 24 7
649 156.65 wind 1.0 14400 < th dose independent rect. 3 4
651 156.66 wind 1.0 14400 < th dose independent rect. 1 4
664 156.68 temperature 20.0 14400 < th dose dependent rect. 8 1
744 156.83 temperature 15.0 14400 < th dose independent rect. 4 4
753 156.84 wind 5.0 14400 > th dose independent rect. 24 11
802 156.94 wind 5.0 14400 < th dose independent rect. 24 11
826 156.98 precipitation 0.1 43200 > th dose independent rect. 12 1
829 156.98 precipitation 0.1 43200 > th dose dependent rect. 12 1
866 157.04 wind 5.0 14400 > th dose independent rect. 8 1
945 157.15 wind 5.0 14400 > th dose dependent rect. 8 1