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Os05g0328000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.46 (0.0299) R2 : 0.876
β1 : -1 (0.11) R2dD : 0.0241 R2D : 0.00601
β2 : 2.04 (0.0983) R2dC : 0.21 R2C : 0.55
β3 : 3.55 (0.14) R2dE : 0.32 R2E : 0.631
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.342 (0.0645) R2dN8 : 0.0109 R2N8 : -0.00428
σ : 0.557
deviance : 142.87
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C
peak time of C : 14.7
E
wheather : temperature
threshold : 6.777
memory length : 223
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.18
open length of G : 20.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.72 0.549 8.44 -0.795 1.93 3.67 -1.63 2.84 -0.293 14.6 8.015 231 5.3 20.2
143.29 0.558 8.44 -0.955 1.88 3.87 -1.24 -- -0.311 14.4 7.754 223 5.43 20.2
144 0.559 8.43 -0.94 1.94 3.72 -- 2.02 -0.303 14.4 7.716 227 5.38 20.2
142.87 0.557 8.46 -1 2.04 3.55 -- -- -0.342 14.7 6.777 223 5.18 20.6
252.24 0.74 8.49 -1 -- 5.01 -- 2.22 -0.478 -- 9.923 178 5.68 19.6
272.81 0.774 8.44 -0.572 3.97 -- 0.293 -- -0.0577 15.8 -- -- -- --
273.06 0.774 8.44 -0.567 3.97 -- -- -- -0.0561 15.8 -- -- -- --
234.18 0.713 8.49 -1.25 -- 4.96 -- -- -0.454 -- 10.01 180 5.84 18.5
168.43 0.604 8.43 -- 2.13 3.45 -- -- -0.193 14.8 5.636 207 5.33 20.6
1141.55 1.58 8.42 -0.732 -- -- -- -- -0.162 -- -- -- -- --
281.55 0.785 8.42 -- 3.98 -- -- -- 0.00712 15.8 -- -- -- --
235 0.714 8.42 -- -- 4.48 -- -- -0.166 -- 2.12 250 5.69 16.7
1155.67 1.59 8.41 -- -- -- -- -- -0.0809 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.65 temperature 10.0 270 > th dose dependent rect. 5 20
89 184.62 temperature 30.0 90 < th dose dependent rect. 13 17
97 185.87 temperature 20.0 90 > th dose independent rect. 6 21
104 186.93 temperature 30.0 90 < th dose dependent rect. 15 15
123 189.20 temperature 30.0 10 < th dose dependent rect. 12 18
170 193.55 temperature 30.0 270 < th dose independent rect. 10 20
176 194.44 temperature 10.0 270 > th dose dependent rect. 15 10
179 195.11 temperature 30.0 270 < th dose independent rect. 11 18
181 195.23 temperature 10.0 270 > th dose dependent rect. 20 13
184 195.79 temperature 20.0 10 > th dose independent rect. 6 21
191 196.24 temperature 30.0 270 < th dose independent rect. 1 18
225 198.15 temperature 30.0 270 < th dose independent rect. 15 14
249 199.72 temperature 30.0 270 < th dose independent rect. 10 9
255 200.05 temperature 30.0 270 < th dose independent rect. 13 16
275 201.63 temperature 30.0 90 < th dose dependent rect. 1 22
285 202.71 temperature 10.0 720 > th dose dependent rect. 13 4
294 203.20 radiation 30.0 270 < th dose dependent rect. 15 14
337 204.58 precipitation 0.1 90 < th dose independent rect. 6 21
339 204.58 precipitation 0.1 90 < th dose dependent rect. 6 21
351 205.30 temperature 30.0 90 < th dose dependent rect. 2 19
358 205.49 temperature 25.0 90 < th dose independent rect. 3 3
360 205.62 humidity 70.0 90 > th dose independent rect. 15 15
367 206.05 wind 7.0 90 < th dose dependent rect. 3 3
370 206.17 temperature 10.0 720 > th dose dependent rect. 6 11
374 206.32 temperature 20.0 270 > th dose independent rect. 15 10
376 206.47 wind 5.0 90 < th dose independent rect. 3 3
378 206.52 precipitation 0.1 270 < th dose independent rect. 14 11
379 206.52 precipitation 0.1 270 < th dose dependent rect. 14 11
415 207.60 atmosphere 995.0 90 > th dose dependent rect. 12 18
417 207.71 humidity 70.0 270 > th dose independent rect. 16 13
438 208.20 wind 9.0 90 < th dose independent rect. 6 21
439 208.23 precipitation 0.1 90 < th dose independent rect. 3 3
440 208.23 precipitation 0.1 90 < th dose dependent rect. 3 3
446 208.35 atmosphere 1015.0 90 < th dose independent rect. 6 21
447 208.37 temperature 10.0 720 > th dose dependent rect. 6 3
455 208.55 temperature 10.0 90 > th dose independent rect. 3 3
458 208.55 humidity 50.0 90 > th dose independent rect. 3 3
461 208.55 atmosphere 995.0 90 > th dose independent rect. 3 3
462 208.55 atmosphere 1010.0 90 < th dose independent rect. 3 3
464 208.55 radiation 20.0 90 < th dose independent rect. 3 3
467 208.55 temperature 10.0 90 > th dose independent rect. 6 21
476 208.75 temperature 30.0 720 < th dose independent rect. 9 4
481 208.82 atmosphere 1015.0 90 < th dose dependent rect. 6 21
487 209.09 atmosphere 995.0 10 > th dose dependent rect. 12 19
492 209.23 atmosphere 1015.0 10 < th dose dependent rect. 7 20
498 209.42 radiation 40.0 90 < th dose dependent rect. 3 3
509 209.66 radiation 1.0 270 < th dose dependent rect. 23 22
519 209.88 temperature 30.0 90 < th dose independent rect. 3 18
577 211.21 humidity 50.0 90 > th dose dependent rect. 3 3
584 211.33 wind 9.0 270 < th dose independent rect. 14 11
586 211.34 atmosphere 995.0 270 > th dose dependent rect. 10 10
598 211.47 precipitation 0.1 270 < th dose independent rect. 4 22
599 211.47 precipitation 0.1 270 < th dose dependent rect. 4 22
606 211.58 radiation 10.0 270 < th dose independent rect. 16 13
623 211.81 radiation 1.0 270 < th dose dependent rect. 1 18
645 212.09 temperature 25.0 270 < th dose independent rect. 1 4
654 212.19 temperature 25.0 270 > th dose dependent sin 10 NA
656 212.22 temperature 10.0 270 > th dose independent rect. 14 11
657 212.22 temperature 10.0 270 > th dose independent rect. 1 13
658 212.22 atmosphere 995.0 270 > th dose independent rect. 1 13
659 212.22 atmosphere 1015.0 270 < th dose independent rect. 1 13
665 212.40 humidity 50.0 90 > th dose dependent rect. 13 17
667 212.43 radiation 1.0 270 < th dose independent rect. 22 23
678 212.60 precipitation 0.1 270 < th dose independent rect. 1 13
679 212.60 precipitation 0.1 270 < th dose dependent rect. 1 13
697 212.88 temperature 30.0 90 < th dose dependent rect. 3 3
706 213.03 temperature 25.0 270 > th dose independent rect. 15 19
717 213.16 temperature 25.0 270 > th dose independent rect. 14 21
720 213.25 wind 9.0 270 < th dose independent rect. 1 13
727 213.31 wind 1.0 270 > th dose independent rect. 2 2
739 213.42 temperature 30.0 720 < th dose independent rect. 2 10
740 213.42 temperature 30.0 10 < th dose dependent rect. 24 23
770 213.82 atmosphere 995.0 90 > th dose dependent rect. 3 3
778 213.90 radiation 1.0 720 < th dose dependent rect. 17 4
786 213.98 temperature 15.0 10 > th dose dependent rect. 21 23
806 214.17 humidity 50.0 90 > th dose dependent rect. 15 15
818 214.26 temperature 10.0 90 > th dose dependent rect. 3 3
845 214.48 temperature 20.0 270 > th dose independent rect. 21 3
851 214.57 atmosphere 1005.0 90 > th dose independent rect. 12 18
924 215.14 temperature 30.0 270 < th dose dependent rect. 1 3
938 215.25 radiation 1.0 270 < th dose independent rect. 1 17
965 215.43 wind 9.0 270 < th dose independent rect. 4 22