Os05g0324700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0324700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 533.62 | 1.09 | 7.3 | 3.94 | 1.34 | -2 | -1.23 | 2.84 | 2.01 | 1.01 | 10.54 | 1353 | -- | -- |
| 546.32 | 1.09 | 7.35 | 3.62 | 1.41 | -1.9 | -0.571 | -- | 1.86 | 0.926 | 10.53 | 1339 | -- | -- |
| 539.39 | 1.08 | 7.3 | 3.93 | 1.37 | -2.01 | -- | 2.47 | 2 | 0.873 | 10.71 | 1343 | -- | -- |
| 548.31 | 1.09 | 7.36 | 3.58 | 1.41 | -1.99 | -- | -- | 1.89 | 0.927 | 10.52 | 1343 | -- | -- |
| 590.9 | 1.13 | 7.3 | 3.77 | -- | -2.19 | -- | 2.87 | 1.96 | -- | 10 | 1678 | -- | -- |
| 651.74 | 1.2 | 7.49 | 2.93 | 1.06 | -- | -1.31 | -- | 1.3 | 1.42 | -- | -- | -- | -- |
| 658.69 | 1.2 | 7.49 | 2.98 | 1.06 | -- | -- | -- | 1.31 | 1.31 | -- | -- | -- | -- |
| 545.73 | 1.09 | 7.39 | 3.13 | -- | -2.47 | -- | -- | 1.59 | -- | 3.5 | 1634 | -- | -- |
| 827.98 | 1.34 | 7.44 | -- | 1.12 | -1.79 | -- | -- | 1.48 | 0.264 | 39.99 | 1430 | -- | -- |
| 728.39 | 1.26 | 7.47 | 3.02 | -- | -- | -- | -- | 1.33 | -- | -- | -- | -- | -- |
| 892.24 | 1.4 | 7.56 | -- | 1.11 | -- | -- | -- | 0.975 | 1.41 | -- | -- | -- | -- |
| 783.11 | 1.3 | 7.44 | -- | -- | -2.72 | -- | -- | 1.45 | -- | 7.13 | 1616 | -- | -- |
| 968.71 | 1.45 | 7.55 | -- | -- | -- | -- | -- | 0.994 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 532.96 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 3 | 534.32 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 5 | 534.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 6 | 534.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 9 | 535.46 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 16 | 535.70 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 19 | 536.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 21 | 536.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 22 | 536.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 26 | 536.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 28 | 536.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 37 | 536.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 62 | 537.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 88 | 538.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 91 | 538.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 105 | 538.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 111 | 538.46 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 126 | 538.61 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 138 | 538.90 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 141 | 538.99 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 153 | 539.14 | humidity | 80 | 1440 | < th | dose dependent | sin | 2 | NA |
| 161 | 539.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 167 | 539.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 177 | 539.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 183 | 539.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 189 | 539.42 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 239 | 539.74 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 258 | 539.89 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 262 | 539.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 293 | 540.03 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 302 | 540.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 303 | 540.05 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 307 | 540.06 | radiation | 10 | 1440 | > th | dose independent | sin | 2 | NA |
| 333 | 540.22 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 358 | 540.39 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 439 | 540.49 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 510 | 540.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 578 | 541.18 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 611 | 541.34 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 727 | 542.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 749 | 542.32 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 21 |