Os05g0324400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0324400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 295.65 | 0.808 | 3.92 | 1.92 | 0.758 | -1.55 | 0.0935 | -4.36 | 0.0828 | 20.7 | 22.6 | 3097 | -- | -- |
| 332.06 | 0.849 | 3.98 | 0.591 | 0.498 | -1.38 | -0.0451 | -- | 0.263 | 20.3 | 28.38 | 3916 | -- | -- |
| 295.68 | 0.801 | 3.92 | 1.92 | 0.759 | -1.55 | -- | -4.36 | 0.0827 | 20.7 | 22.58 | 3092 | -- | -- |
| 328.8 | 0.845 | 3.99 | 0.712 | 0.626 | -1.59 | -- | -- | 0.214 | 19.7 | 28.5 | 3917 | -- | -- |
| 322.56 | 0.836 | 3.93 | 1.98 | -- | -1.39 | -- | -3.97 | 0.08 | -- | 23 | 2167 | -- | -- |
| 410.9 | 0.95 | 3.96 | 1.08 | 0.752 | -- | 0.0115 | -- | 0.281 | 21 | -- | -- | -- | -- |
| 410.9 | 0.949 | 3.96 | 1.08 | 0.752 | -- | -- | -- | 0.281 | 21 | -- | -- | -- | -- |
| 349.11 | 0.87 | 3.97 | 0.565 | -- | -1.77 | -- | -- | 0.156 | -- | 28.3 | 3756 | -- | -- |
| 337.5 | 0.856 | 3.99 | -- | 0.606 | -1.69 | -- | -- | 0.198 | 19.6 | 27.7 | 3825 | -- | -- |
| 443.43 | 0.984 | 3.94 | 1.08 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 441.82 | 0.983 | 3.99 | -- | 0.751 | -- | -- | -- | 0.16 | 21.1 | -- | -- | -- | -- |
| 351.52 | 0.873 | 4.04 | -- | -- | -1.92 | -- | -- | -0.107 | -- | 26.2 | 5065 | -- | -- |
| 474.44 | 1.02 | 3.97 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 290.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 4 | 291.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 9 | 291.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 31 | 292.63 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 66 | 293.57 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 124 | 294.14 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 200 | 294.70 | temperature | 15 | 4320 | > th | dose dependent | sin | 13 | NA |
| 424 | 296.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 440 | 296.39 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 455 | 296.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 481 | 296.66 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 494 | 296.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 23 |
| 553 | 297.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |